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Name of Species	No. of genomes	No. of cliques	Represented Clique Type
Abiotrophia defectiva	1	1	singleton
Acaricomes phytoseiuli	1	1	singleton
Acaryochloris marina	1	1	singleton
Acaryochloris sp.	1	1	singleton
Acetivibrio cellulolyticus	1	1	singleton
Acetobacter aceti	2	1	clique
Acetobacter nitrogenifigens	1	1	singleton
Acetobacter pasteurianus	13	2	clique + singleton
Acetobacter pomorum	1	1	singleton
Acetobacter tropicalis	1	1	singleton
Acetobacterium dehalogenans	1	1	singleton
Acetobacterium woodii	1	1	singleton
Acetohalobium arabaticum	1	1	singleton
Acetonema longum	1	1	singleton
Acholeplasma axanthum	1	1	singleton
Acholeplasma granularum	1	1	singleton
Acholeplasma laidlawii	1	1	singleton
Acholeplasma multilocale	1	1	singleton
Achromobacter arsenitoxydans	1	1	singleton
Achromobacter piechaudii	2	2	singleton
Achromobacter xylosoxidans	4	3	clique + singleton
Acidaminococcus fermentans	1	1	singleton
Acidaminococcus intestini	2	1	clique
Acidaminococcus sp.	2	1	clique
Acidianus hospitalis	1	1	singleton
Acidilobus saccharovorans	1	1	singleton
Acidilobus sulfurireducens	1	1	singleton
Acidimicrobium ferrooxidans	1	1	singleton
Acidiphilium cryptum	1	1	clique
Acidiphilium multivorum	1	1	clique
Acidiphilium sp.	1	1	clique
Acidithiobacillus caldus	2	1	clique
Acidithiobacillus ferrivorans	1	1	singleton
Acidithiobacillus ferrooxidans	2	1	clique
Acidobacterium capsulatum	1	1	singleton
Acidobacterium unclassified	1	1	singleton
Acidocella sp.	1	1	singleton
Acidothermus cellulolyticus	1	1	singleton
Acidovorax avenae	3	3	singleton
Acidovorax delafieldii	1	1	singleton
Acidovorax ebreus	1	1	clique
Acidovorax radicis	2	1	clique
Acidovorax soli	1	1	clique
Acidovorax sp.	7	7	clique + singleton
Acidovorax temperans	1	1	singleton
Aciduliprofundum boonei	2	2	singleton
Aciduliprofundum sp.	1	1	singleton
Acinetobacter baumannii	242	6	clique + clique group + singleton
Acinetobacter baylyi	2	1	clique
Acinetobacter berezeniae	1	1	clique
Acinetobacter bouvetii	1	1	singleton
Acinetobacter calcoaceticus	11	5	clique + clique group
Acinetobacter gerneri	1	1	singleton
Acinetobacter guillouiae	1	1	singleton
Acinetobacter gyllenbergii	1	1	singleton
Acinetobacter haemolyticus	7	1	clique
Acinetobacter johnsonii	5	3	clique + singleton
Acinetobacter junii	6	1	clique
Acinetobacter lwoffii	8	5	clique group + singleton
Acinetobacter nosocomialis	4	1	clique
Acinetobacter parvus	1	1	singleton
Acinetobacter pittii	4	1	clique group
Acinetobacter radioresistens	8	1	clique
Acinetobacter schindleri	1	1	clique
Acinetobacter sp.	24	16	clique + clique group + singleton
Acinetobacter tjernbergiae	1	1	singleton
Acinetobacter unclassified	4	1	clique
Acinetobacter ursingii	1	1	singleton
Acinetobacter venetianus	2	1	clique
Actinoalloteichus cyanogriseus	1	1	singleton
Actinobacillus capsulatus	1	1	singleton
Actinobacillus minor	2	2	singleton
Actinobacillus pleuropneumoniae	16	1	clique
Actinobacillus succinogenes	1	1	singleton
Actinobacillus suis	1	1	singleton
Actinobacillus ureae	1	1	singleton
Actinobaculum massiliae	1	1	singleton
Actinobaculum schaalii	2	2	singleton
Actinobaculum sp.	1	1	singleton
Actinobaculum urinale	1	1	singleton
Actinokineospora enzanensis	1	1	singleton
Actinokineospora inagensis	1	1	singleton
Actinomadura atramentaria	1	1	singleton
Actinomadura cremea	1	1	singleton
Actinomadura flavalba	1	1	singleton
Actinomadura oligospora	1	1	singleton
Actinomyces cardiffensis	1	1	singleton
Actinomyces coleocanis	1	1	singleton
Actinomyces dentalis	1	1	singleton
Actinomyces europaeus	1	1	singleton
Actinomyces georgiae	2	1	clique
Actinomyces gerencseriae	1	1	singleton
Actinomyces graevenitzii	2	2	singleton
Actinomyces johnsonii	2	1	clique
Actinomyces massiliensis	2	1	clique
Actinomyces naeslundii	2	2	clique + singleton
Actinomyces neuii	2	2	singleton
Actinomyces odontolyticus	2	1	clique
Actinomyces oris	1	1	clique
Actinomyces slackii	1	1	singleton
Actinomyces sp.	15	14	clique + singleton
Actinomyces suimastitidis	1	1	singleton
Actinomyces timonensis	1	1	singleton
Actinomyces turicensis	1	1	singleton
Actinomyces urogenitalis	1	1	singleton
Actinomyces vaccimaxillae	1	1	singleton
Actinomyces viscosus	1	1	clique
Actinomycetospora chiangmaiensis	1	1	singleton
Actinoplanes friuliensis	1	1	singleton
Actinoplanes globisporus	1	1	singleton
Actinoplanes missouriensis	1	1	singleton
Actinoplanes sp.	3	3	singleton
Actinopolymorpha alba	1	1	singleton
Actinopolyspora halophila	1	1	singleton
Actinopolyspora iraqiensis	1	1	clique
Actinopolyspora mortivallis	1	1	singleton
Actinospica robiniae	1	1	singleton
Actinosynnema mirum	1	1	singleton
Adhaeribacter aquaticus	1	1	singleton
Advenella kashmirensis	1	1	singleton
Aequorivita capsosiphonis	1	1	singleton
Aequorivita sublithincola	1	1	singleton
Aerococcus urinae	1	1	singleton
Aerococcus urinaeequi	1	1	singleton
Aerococcus viridans	2	2	singleton
Aeromicrobium massiliense	1	1	singleton
Aeromonas caviae	1	1	singleton
Aeromonas diversa	1	1	singleton
Aeromonas hydrophila	10	2	clique
Aeromonas media	1	1	singleton
Aeromonas molluscorum	1	1	singleton
Aeromonas salmonicida	4	1	clique
Aeromonas sp.	3	3	clique + singleton
Aeromonas veronii	6	2	clique + singleton
Aeropyrum camini	1	1	singleton
Aestuariibacter salexigens	1	1	singleton
Aestuariimicrobium kwangyangense	1	1	singleton
Afipia birgiae	1	1	singleton
Afipia broomeae	1	1	singleton
Afipia clevelandensis	1	1	clique
Afipia felis	1	1	singleton
Afipia sp.	1	1	singleton
Aggregatibacter actinomycetemcomitans	19	2	clique
Aggregatibacter aphrophilus	3	1	clique
Aggregatibacter segnis	1	1	singleton
Aggregatibacter sp.	1	1	singleton
Agreia sp.	1	1	singleton
Agrobacterium albertimagni	1	1	singleton
Agrobacterium rhizogenes	1	1	clique
Agrobacterium sp.	7	4	clique + singleton
Agrobacterium tumefaciens	6	4	clique + singleton
Agrobacterium vitis	1	1	singleton
Agrococcus lahaulensis	1	1	singleton
Agromyces italicus	1	1	singleton
Agromyces subbeticus	1	1	singleton
Ahrensia kielensis	1	1	singleton
Ahrensia sp.	1	1	singleton
Akkermansia muciniphila	1	1	singleton
Alcaligenes faecalis	2	2	singleton
Alcanivorax borkumensis	1	1	clique
Alcanivorax dieselolei	1	1	singleton
Alcanivorax hongdengensis	1	1	singleton
Alcanivorax pacificus	1	1	singleton
Alcanivorax sp.	4	3	clique + singleton
Algicola sagamiensis	1	1	singleton
Algoriphagus mannitolivorans	1	1	singleton
Algoriphagus marincola	1	1	singleton
Algoriphagus sp.	1	1	singleton
Algoriphagus terrigena	1	1	singleton
Algoriphagus vanfongensis	1	1	singleton
Aliagarivorans marinus	1	1	singleton
Aliagarivorans taiwanensis	1	1	singleton
Alicycliphilus denitrificans	2	1	clique
Alicycliphilus sp.	1	1	singleton
Alicyclobacillus acidocaldarius	3	3	singleton
Alicyclobacillus contaminans	1	1	singleton
Alicyclobacillus herbarius	1	1	singleton
Alicyclobacillus hesperidum	1	1	singleton
Alicyclobacillus pohliae	1	1	singleton
Alicyclobacillus pomorum	1	1	singleton
Aliivibrio fischeri	1	1	clique
Aliivibrio logei	2	1	clique group
Aliivibrio salmonicida	1	1	clique group
Alishewanella aestuarii	1	1	singleton
Alishewanella agri	1	1	singleton
Alishewanella jeotgali	1	1	singleton
Alistipes finegoldii	1	1	clique
Alistipes indistinctus	1	1	singleton
Alistipes obesi	1	1	singleton
Alistipes onderdonkii	1	1	singleton
Alistipes putredinis	1	1	singleton
Alistipes senegalensis	1	1	singleton
Alistipes sp.	2	2	clique + singleton
Alistipes timonensis	1	1	singleton
Alkalibacillus haloalkaliphilus	1	1	singleton
Alkaliflexus imshenetskii	1	1	singleton
Alkalilimnicola ehrlichei	1	1	singleton
Alkaliphilus metalliredigens	1	1	singleton
Alkaliphilus oremlandii	1	1	singleton
Allobaculum stercoricanis	1	1	singleton
Allochromatium vinosum	1	1	singleton
Allofustis seminis	1	1	singleton
Alloiococcus otitis	1	1	singleton
Alloscardovia omnicolens	2	1	clique
Alteromonas macleodii	14	3	clique + singleton
Alteromonas sp.	2	2	singleton
Alteromonas taeanensis	1	1	singleton
Aminiphilus circumscriptus	1	1	singleton
Aminobacter sp.	3	1	clique
Aminobacterium colombiense	1	1	singleton
Aminobacterium mobile	1	1	singleton
Aminomonas paucivorans	1	1	singleton
Ammonifex degensii	1	1	clique
Ammonifex degensii	1	1	clique
Amorphus coralli	1	1	singleton
Amphibacillus jilinensis	1	1	singleton
Amphibacillus xylanus	1	1	singleton
Amphritea japonica	1	1	singleton
Amycolatopsis alba	1	1	singleton
Amycolatopsis azurea	1	1	singleton
Amycolatopsis balhimycina	1	1	singleton
Amycolatopsis benzoatilytica	1	1	singleton
Amycolatopsis decaplanina	1	1	singleton
Amycolatopsis halophila	1	1	singleton
Amycolatopsis mediterranei	4	1	clique
Amycolatopsis methanolica	1	1	clique
Amycolatopsis nigrescens	1	1	singleton
Amycolatopsis orientalis	4	4	singleton
Amycolatopsis sp.	2	2	singleton
Amycolatopsis taiwanensis	1	1	singleton
Amycolatopsis thermoflava	1	1	clique
Amycolatopsis vancoresmycina	1	1	singleton
Amycolicicoccus subflavus	1	1	singleton
Anabaena circinalis	2	1	clique
Anabaena cylindrica	1	1	singleton
Anabaena sp.	2	2	singleton
Anabaena variabilis	1	1	singleton
Anaeroarcus burkinensis	1	1	clique
Anaerobaculum mobile	1	1	singleton
Anaerobaculum sp.	1	1	singleton
Anaerococcus hydrogenalis	2	1	clique
Anaerococcus lactolyticus	1	1	singleton
Anaerococcus prevotii	2	2	singleton
Anaerococcus senegalensis	1	1	singleton
Anaerococcus sp.	2	2	clique + singleton
Anaerococcus tetradius	1	1	singleton
Anaerococcus vaginalis	1	1	clique
Anaerofustis stercorihominis	1	1	singleton
Anaerolinea thermophila	1	1	singleton
Anaeromusa acidaminophila	1	1	clique
Anaeromyxobacter dehalogenans	2	2	clique + singleton
Anaeromyxobacter sp.	2	2	clique + singleton
Anaerophaga sp.	1	1	singleton
Anaerophaga thermohalophila	2	2	singleton
Anaerostipes caccae	1	1	clique
Anaerostipes hadrus	1	1	clique
Anaerostipes sp.	1	1	clique
Anaerovorax odorimutans	1	1	singleton
Anaplasma centrale	1	1	singleton
Anaplasma marginale	11	1	clique group
Anaplasma phagocytophilum	4	1	clique
Ancylobacter sp.	1	1	clique
Aneurinibacillus terranovensis	1	1	singleton
Anoxybacillus flavithermus	3	3	singleton
Anoxybacillus sp.	2	2	clique + singleton
Aquaspirillum serpens	1	1	singleton
Aquifex aeolicus	1	1	singleton
Aquiflexum balticum	1	1	singleton
Aquimarina agarilytica	1	1	singleton
Aquimarina latercula	1	1	singleton
Aquimarina muelleri	1	1	singleton
Arcanobacterium haemolyticum	1	1	singleton
Archaeoglobus fulgidus	2	1	clique
Archaeoglobus veneficus	1	1	singleton
Arcobacter butzleri	4	1	clique
Arcobacter nitrofigilis	1	1	singleton
Arcobacter sp.	4	3	clique + singleton
Arcticibacter svalbardensis	1	1	singleton
Arenibacter certesii	1	1	singleton
Arenibacter latericius	1	1	singleton
Arenimonas composti	1	1	singleton
Arenimonas oryziterrae	1	1	singleton
Arenimonas sp.	1	1	clique
Arhodomonas aquaeolei	1	1	singleton
Aromatoleum aromaticum	1	1	singleton
Arsenicicoccus bolidensis	1	1	singleton
Arsenophonus nasoniae	1	1	clique
Arsenophonus pediculi	1	1	clique
Arsenophonus sp.	1	1	clique
Arsenophonus triatominarum	1	1	singleton
Arthrobacter arilaitensis	1	1	singleton
Arthrobacter aurescens	1	1	clique
Arthrobacter castelli	1	1	singleton
Arthrobacter chlorophenolicus	1	1	singleton
Arthrobacter crystallopoietes	1	1	singleton
Arthrobacter gangotriensis	1	1	singleton
Arthrobacter globiformis	1	1	singleton
Arthrobacter nicotinovorans	2	1	clique
Arthrobacter nitroguajacolicus	1	1	clique
Arthrobacter sp.	15	14	clique + singleton
Arthrospira maxima	1	1	clique
Arthrospira platensis	3	2	clique
Asticcacaulis benevestitus	1	1	singleton
Asticcacaulis biprosthecum	1	1	singleton
Asticcacaulis excentricus	1	1	singleton
Atopobacter phocae	1	1	singleton
Atopobium fossor	1	1	singleton
Atopobium minutum	1	1	singleton
Atopobium parvulum	1	1	singleton
Atopobium rimae	1	1	singleton
Atopobium sp.	3	3	clique + singleton
Atopobium vaginae	3	2	clique + singleton
Atopococcus tabaci	1	1	singleton
Aurantimonas coralicida	1	1	singleton
Aurantimonas manganoxydans	1	1	singleton
Aurantimonas ureilytica	1	1	singleton
Austwickia chelonae	1	1	singleton
Avibacterium paragallinarum	2	1	clique
Azoarcus sp.	1	1	singleton
Azoarcus toluclasticus	1	1	singleton
Azohydromonas australica	1	1	singleton
Azonexus hydrophilus	1	1	singleton
Azorhizobium caulinodans	1	1	singleton
Azorhizobium doebereinerae	1	1	singleton
Azospira suillum	1	1	clique
Azospirillum brasilense	2	2	singleton
Azospirillum halopraeferens	1	1	singleton
Azospirillum irakense	1	1	singleton
Azospirillum lipoferum	1	1	singleton
Azotobacter vinelandii	3	1	clique
Azovibrio restrictus	1	1	singleton
Bacillus acidiproducens	1	1	singleton
Bacillus aerophilus	1	1	clique
Bacillus aidingensis	1	1	singleton
Bacillus alcalophilus	1	1	singleton
Bacillus amyloliquefaciens	15	2	clique
Bacillus anthracis	26	1	clique
Bacillus atrophaeus	15	1	clique
Bacillus aurantiacus	1	1	singleton
Bacillus azotoformans	1	1	singleton
Bacillus bataviensis	1	1	singleton
Bacillus cellulosilyticus	1	1	singleton
Bacillus cereus	145	21	clique + clique group + singleton
Bacillus chagannorensis	1	1	singleton
Bacillus clausii	1	1	singleton
Bacillus coagulans	8	2	clique
Bacillus coahuilensis	1	1	singleton
Bacillus endophyticus	1	1	singleton
Bacillus flexus	1	1	clique
Bacillus fordii	1	1	singleton
Bacillus gelatini	1	1	singleton
Bacillus ginsengihumi	1	1	singleton
Bacillus halodurans	1	1	singleton
Bacillus isronensis	1	1	clique
Bacillus kribbensis	1	1	singleton
Bacillus licheniformis	7	2	clique
Bacillus macauensis	1	1	singleton
Bacillus massilioanorexius	1	1	singleton
Bacillus massiliosenegalensis	1	1	singleton
Bacillus megaterium	4	2	clique + clique group
Bacillus methanolicus	2	2	singleton
Bacillus mojavensis	2	2	singleton
Bacillus mycoides	3	2	clique
Bacillus nealsonii	1	1	singleton
Bacillus oceanisediminis	1	1	clique
Bacillus panaciterrae	1	1	singleton
Bacillus pseudofirmus	1	1	singleton
Bacillus pseudomycoides	1	1	clique
Bacillus psychrosaccharolyticus	1	1	singleton
Bacillus pumilus	4	3	clique + singleton
Bacillus safensis	1	1	singleton
Bacillus selenitireducens	1	1	singleton
Bacillus siamensis	1	1	singleton
Bacillus simplex	1	1	singleton
Bacillus smithii	1	1	singleton
Bacillus sonorensis	1	1	singleton
Bacillus sp.	39	32	clique + clique group + singleton
Bacillus stratosphericus	1	1	clique
Bacillus subtilis	36	5	clique + singleton
Bacillus thuringiensis	29	5	clique + clique group
Bacillus timonensis	1	1	singleton
Bacillus vallismortis	1	1	singleton
Bacillus weihenstephanensis	1	1	clique
Bacteriovorax marinus	1	1	singleton
Bacteriovorax sp.	4	4	singleton
Bacteroides barnesiae	1	1	singleton
Bacteroides caccae	2	1	clique
Bacteroides capillosus	1	1	singleton
Bacteroides cellulosilyticus	2	1	clique
Bacteroides clarus	1	1	singleton
Bacteroides coprocola	1	1	singleton
Bacteroides coprophilus	1	1	singleton
Bacteroides coprosuis	1	1	singleton
Bacteroides dorei	5	1	clique
Bacteroides eggerthii	2	1	clique
Bacteroides faecis	1	1	singleton
Bacteroides finegoldii	2	2	singleton
Bacteroides fluxus	1	1	singleton
Bacteroides fragilis	12	2	clique
Bacteroides gallinarum	1	1	singleton
Bacteroides graminisolvens	1	1	singleton
Bacteroides helcogenes	1	1	singleton
Bacteroides intestinalis	1	1	singleton
Bacteroides massiliensis	2	1	clique
Bacteroides nordii	1	1	clique
Bacteroides oleiciplenus	1	1	singleton
Bacteroides ovatus	12	3	clique + clique group
Bacteroides pectinophilus	1	1	singleton
Bacteroides plebeius	1	1	singleton
Bacteroides propionicifaciens	1	1	singleton
Bacteroides pyogenes	1	1	singleton
Bacteroides salanitronis	1	1	singleton
Bacteroides salyersiae	2	1	clique
Bacteroides sp.	25	12	clique + clique group + singleton
Bacteroides stercoris	2	1	clique
Bacteroides tectus	1	1	singleton
Bacteroides thetaiotaomicron	8	1	clique
Bacteroides uniformis	3	1	clique
Bacteroides vulgatus	6	1	clique
Bacteroides xylanisolvens	14	1	clique group
Bacteroidetes sp.	1	1	clique
Bacteroidetes unclassified	1	1	singleton
Balneimonas flocculans	1	1	singleton
Balneola vulgaris	1	1	singleton
Barnesiella intestinihominis	1	1	singleton
Barnesiella viscericola	1	1	singleton
Bartonella alsatica	1	1	singleton
Bartonella australis	1	1	singleton
Bartonella bacilliformis	2	1	clique
Bartonella birtlesii	2	1	clique
Bartonella bovis	1	1	singleton
Bartonella clarridgeiae	2	1	clique
Bartonella doshiae	2	1	clique
Bartonella elizabethae	3	1	clique
Bartonella grahamii	2	1	clique
Bartonella henselae	1	1	singleton
Bartonella melophagi	1	1	singleton
Bartonella queenslandensis	1	1	singleton
Bartonella quintana	2	1	clique
Bartonella rattaustraliani	1	1	singleton
Bartonella rattimassiliensis	2	1	clique
Bartonella schoenbuchensis	1	1	singleton
Bartonella senegalensis	1	1	singleton
Bartonella sp.	2	2	singleton
Bartonella tamiae	2	1	clique
Bartonella taylorii	1	1	singleton
Bartonella tribocorum	1	1	singleton
Bartonella vinsonii	5	2	clique
Bartonella washoensis	2	1	clique
Basfia succiniciproducens	1	1	singleton
Baumannia cicadellinicola	1	1	singleton
Bavariicoccus seileri	1	1	singleton
Bdellovibrio bacteriovorus	3	3	singleton
Bdellovibrio exovorus	1	1	singleton
Beggiatoa alba	1	1	singleton
Beggiatoa sp.	2	2	singleton
Beijerinckia indica	1	1	singleton
Belliella baltica	1	1	singleton
Bergeyella zoohelcum	2	1	clique
Bermanella marisrubri	1	1	singleton
Beutenbergia cavernae	1	1	singleton
Bhargavaea cecembensis	1	1	singleton
Bibersteinia trehalosi	1	1	singleton
Bifidobacterium adolescentis	2	1	clique
Bifidobacterium angulatum	1	1	singleton
Bifidobacterium animalis	14	2	clique + singleton
Bifidobacterium asteroides	1	1	singleton
Bifidobacterium bifidum	7	1	clique
Bifidobacterium breve	7	1	clique
Bifidobacterium catenulatum	1	1	singleton
Bifidobacterium choerinum	1	1	singleton
Bifidobacterium dentium	4	1	clique
Bifidobacterium gallicum	1	1	singleton
Bifidobacterium longum	19	2	clique + clique group
Bifidobacterium magnum	1	1	singleton
Bifidobacterium minimum	1	1	singleton
Bifidobacterium pseudocatenulatum	2	1	clique
Bifidobacterium pseudolongum	1	1	singleton
Bifidobacterium sp.	2	2	clique group + singleton
Bifidobacterium subtile	1	1	singleton
Bifidobacterium thermacidophilum	1	1	singleton
Bifidobacterium thermophilum	1	1	singleton
Bifidobacterium tsurumiense	1	1	singleton
Bilophila sp.	1	1	clique
Bilophila wadsworthia	1	1	clique
Bizionia argentinensis	1	1	singleton
Blastococcus saxobsidens	1	1	singleton
Blastomonas sp.	1	1	singleton
Blastopirellula marina	1	1	singleton
Blattabacterium sp.	7	5	clique + singleton
Blautia hansenii	1	1	clique
Blautia hydrogenotrophica	1	1	singleton
Blautia producta	2	1	clique
Blautia sp.	1	1	clique
Blautia wexlerae	2	1	clique group
Bordetella avium	1	1	singleton
Bordetella bronchiseptica	4	1	clique
Bordetella holmesii	3	1	clique
Bordetella parapertussis	1	1	clique
Bordetella pertussis	7	1	clique
Bordetella petrii	3	3	singleton
Bordetella sp.	1	1	singleton
Borrelia afzelii	4	1	clique
Borrelia burgdorferi	17	2	clique group + singleton
Borrelia coriaceae	1	1	singleton
Borrelia crocidurae	1	1	clique
Borrelia duttonii	1	1	clique
Borrelia garinii	5	1	clique
Borrelia hermsii	1	1	singleton
Borrelia recurrentis	1	1	clique
Borrelia sp.	1	1	clique group
Borrelia spielmanii	1	1	singleton
Borrelia turicatae	1	1	singleton
Borrelia valaisiana	1	1	singleton
Brachybacterium faecium	1	1	singleton
Brachybacterium muris	1	1	singleton
Brachybacterium paraconglomeratum	1	1	singleton
Brachybacterium squillarum	1	1	singleton
Brachymonas chironomi	1	1	singleton
Brachyspira alvinipulli	1	1	singleton
Brachyspira hampsonii	1	1	singleton
Brachyspira hyodysenteriae	2	1	clique
Brachyspira innocens	1	1	singleton
Brachyspira intermedia	1	1	singleton
Brachyspira murdochii	1	1	singleton
Brachyspira pilosicoli	4	1	clique
Bradyrhizobium canariense	1	1	singleton
Bradyrhizobium elkanii	7	4	clique + singleton
Bradyrhizobium japonicum	14	10	clique + singleton
Bradyrhizobium sp.	24	23	clique + singleton
Brenneria salicis	1	1	singleton
Brevibacillus agri	1	1	clique
Brevibacillus borstelensis	1	1	singleton
Brevibacillus brevis	3	2	clique + singleton
Brevibacillus laterosporus	3	2	clique + singleton
Brevibacillus massiliensis	1	1	singleton
Brevibacillus sp.	2	2	clique + singleton
Brevibacillus thermoruber	1	1	singleton
Brevibacterium album	1	1	singleton
Brevibacterium casei	1	1	singleton
Brevibacterium linens	1	1	singleton
Brevibacterium massiliense	1	1	singleton
Brevibacterium mcbrellneri	1	1	singleton
Brevibacterium senegalense	1	1	singleton
Brevundimonas aveniformis	1	1	singleton
Brevundimonas diminuta	2	2	singleton
Brevundimonas naejangsanensis	1	1	singleton
Brevundimonas sp.	1	1	singleton
Brevundimonas subvibrioides	1	1	singleton
Brucella abortus	101	1	clique
Brucella canis	10	1	clique
Brucella ceti	5	1	clique
Brucella melitensis	52	1	clique
Brucella microti	1	1	clique
Brucella neotomae	1	1	clique
Brucella ovis	15	1	clique
Brucella pinnipedialis	4	1	clique
Brucella sp.	16	1	clique
Brucella suis	33	1	clique
Buchnera aphidicola	14	7	clique + singleton
Budvicia aquatica	1	1	singleton
Bulleidia extructa	1	1	singleton
Burkholderia ambifaria	3	1	clique group
Burkholderia bryophila	1	1	singleton
Burkholderia cenocepacia	8	2	clique
Burkholderia cepacia	5	5	clique + clique group + singleton
Burkholderia dilworthii	1	1	singleton
Burkholderia dolosa	1	1	singleton
Burkholderia gladioli	2	1	clique
Burkholderia glumae	4	1	clique group
Burkholderia graminis	1	1	clique
Burkholderia kururiensis	1	1	singleton
Burkholderia mallei	10	1	clique group
Burkholderia mimosarum	2	1	clique
Burkholderia multivorans	7	1	clique
Burkholderia nodosa	1	1	singleton
Burkholderia oklahomensis	2	1	clique
Burkholderia phenoliruptrix	2	1	clique
Burkholderia phymatum	1	1	singleton
Burkholderia phytofirmans	1	1	singleton
Burkholderia pseudomallei	53	1	clique group
Burkholderia pyrrocinia	1	1	singleton
Burkholderia rhizoxinica	1	1	singleton
Burkholderia sp.	30	26	clique + singleton
Burkholderia sprentiae	1	1	singleton
Burkholderia terrae	1	1	clique
Burkholderia thailandensis	8	2	clique
Burkholderia tuberum	1	1	clique
Burkholderia ubonensis	1	1	singleton
Burkholderia unamae	1	1	singleton
Burkholderia vietnamiensis	2	2	clique
Burkholderia xenovorans	1	1	singleton
Butyricicoccus pullicaecorum	1	1	singleton
Butyricimonas synergistica	1	1	singleton
Butyricimonas virosa	1	1	singleton
Butyrivibrio crossotus	1	1	singleton
Butyrivibrio fibrisolvens	7	2	clique group + singleton
Butyrivibrio hungatei	1	1	singleton
Butyrivibrio proteoclasticum	1	1	singleton
Butyrivibrio sp.	21	17	clique + singleton
Caenispirillum salinarum	1	1	singleton
Caldalkalibacillus thermarum	1	1	singleton
Caldanaerobacter subterraneus	2	2	singleton
Caldanaerobius polysaccharolyticum	1	1	singleton
Caldicellulosiruptor acetigenus	1	1	clique
Caldicellulosiruptor bescii	1	1	singleton
Caldicellulosiruptor hydrothermalis	1	1	singleton
Caldicellulosiruptor kristjanssonii	3	1	clique
Caldicellulosiruptor kronotskyensis	1	1	singleton
Caldicellulosiruptor lactoaceticus	1	1	clique
Caldicellulosiruptor obsidiansis	1	1	singleton
Caldicellulosiruptor owensensis	1	1	singleton
Caldicellulosiruptor saccharolyticus	1	1	clique
Caldicellulosiruptor sp.	1	1	clique
Caldicoprobacter oshimai	1	1	singleton
Caldilinea aerophila	2	1	clique
Caldimonas manganoxidans	1	1	singleton
Caldisericum exile	1	1	singleton
Caldisphaera lagunensis	1	1	singleton
Calditerrivibrio nitroreducens	1	1	singleton
Caldithrix abyssi	1	1	singleton
Caldivirga maquilingensis	1	1	singleton
Caloramator australicus	1	1	singleton
Caloramator sp.	1	1	singleton
Calothrix desertica	1	1	singleton
Calothrix sp.	3	3	singleton
Caminibacter mediatlanticus	1	1	singleton
Campylobacter coli	45	1	clique group
Campylobacter concisus	2	2	singleton
Campylobacter curvus	2	2	clique + singleton
Campylobacter fetus	2	1	clique
Campylobacter hominis	1	1	singleton
Campylobacter jejuni	85	2	clique group + singleton
Campylobacter lari	1	1	singleton
Campylobacter rectus	1	1	singleton
Campylobacter showae	3	3	singleton
Campylobacter sp.	4	4	clique + clique group + singleton
Campylobacter upsaliensis	2	1	clique
Campylobacter ureolyticus	1	1	singleton
Candidatus Accumulibacter phosphatis	1	1	singleton
Candidatus Acetothermum autotrophicum	1	1	singleton
Candidatus Amoebophilus asiaticus	1	1	singleton
Candidatus Aquiluna sp.	1	1	singleton
Candidatus Arthromitus sp.	6	2	clique + singleton
Candidatus Azobacteroides pseudotrichonymphae	1	1	singleton
Candidatus Blochmannia chromaiodes	1	1	clique
Candidatus Blochmannia floridanus	1	1	singleton
Candidatus Blochmannia pennsylvanicus	1	1	clique
Candidatus Blochmannia vafer	1	1	singleton
Candidatus Caldiarchaeum subterraneum	1	1	singleton
Candidatus Chloracidobacterium thermophilum	1	1	singleton
Candidatus Chlorothrix halophila	1	1	singleton
Candidatus Cloacamonas acidaminovorans	1	1	clique
Candidatus Desulforudis audaxviator	1	1	singleton
Candidatus Endolissoclinum patella	1	1	singleton
Candidatus Endomicrobium sp.	1	1	singleton
Candidatus Frankia datiscae	1	1	singleton
Candidatus Glomeribacter gigasporarum	1	1	singleton
Candidatus Glomeribacter sp.	1	1	singleton
Candidatus Hamiltonella defensa	2	1	clique
Candidatus Korarchaeum cryptofilum	1	1	singleton
Candidatus Koribacter versatilis	1	1	singleton
Candidatus Kuenenia stuttgartiensis	2	1	clique
Candidatus Liberibacter americanus	2	1	clique
Candidatus Liberibacter asiaticus	2	1	clique
Candidatus Liberibacter crescens	1	1	singleton
Candidatus Liberibacter solanacearum	1	1	singleton
Candidatus Methanomassiliicoccus intestinalis	1	1	singleton
Candidatus Methanomethylophilus Candidatus	1	1	singleton
Candidatus Methanoregula boonei	1	1	singleton
Candidatus Methylomirabilis oxyfera	1	1	singleton
Candidatus Midichloria mitochondrii	1	1	singleton
Candidatus Moranella endobia	2	1	clique
Candidatus Mycoplasma haemominutum	1	1	singleton
Candidatus Nanosalinarum sp.	1	1	singleton
Candidatus Nitrosoarchaeum limnia	1	1	singleton
Candidatus Nitrosopumilus koreensis	1	1	singleton
Candidatus Nitrosopumilus sp.	1	1	singleton
Candidatus Nitrospira defluvii	1	1	singleton
Candidatus Odyssella thessalonicensis	1	1	singleton
Candidatus Pelagibacter sp.	2	2	singleton
Candidatus Pelagibacter ubique	9	5	clique + singleton
Candidatus Phytoplasma australiense	1	1	singleton
Candidatus Phytoplasma mali	1	1	singleton
Candidatus Phytoplasma unclassified	2	2	singleton
Candidatus Poribacteria sp.	3	3	singleton
Candidatus Portiera aleyrodidarum	3	1	clique
Candidatus Portiera sp.	1	1	clique
Candidatus Prevotella conceptionensis	1	1	singleton
Candidatus Protochlamydia amoebophila	1	1	singleton
Candidatus Puniceispirillum marinum	1	1	singleton
Candidatus Regiella insecticola	2	1	clique
Candidatus Rhodoluna lacicola	1	1	singleton
Candidatus Rickettsia amblyommii	1	1	clique
Candidatus Riesia pediculicola	1	1	clique
Candidatus Ruthia magnifica	1	1	singleton
Candidatus Saccharimonas aalborgensis	1	1	singleton
Candidatus Serratia symbiotica	1	1	singleton
Candidatus Solibacter usitatus	1	1	singleton
Candidatus Sulcia muelleri	4	3	clique + singleton
Candidatus Tremblaya princeps	2	1	clique
Candidatus Uzinura sp.	1	1	singleton
Candidatus Vesicomyosocius okutanii	1	1	singleton
Candidatus Zinderia insecticola	1	1	singleton
Capnocytophaga canimorsus	1	1	singleton
Capnocytophaga cynodegmi	1	1	singleton
Capnocytophaga gingivalis	1	1	singleton
Capnocytophaga granulosa	1	1	clique
Capnocytophaga ochracea	3	1	clique
Capnocytophaga sp.	10	6	clique + singleton
Capnocytophaga sputigena	1	1	singleton
Carboxydothermus ferrireducens	1	1	clique
Carboxydothermus hydrogenoformans	1	1	clique
Cardiobacterium hominis	1	1	singleton
Carnimonas nigrificans	1	1	singleton
Carnobacterium maltaromaticum	2	1	clique
Carnobacterium sp.	2	2	singleton
Catellibacterium nectariphilum	1	1	singleton
Catellicoccus marimammalium	1	1	singleton
Catelliglobosispora koreensis	1	1	singleton
Catenibacterium mitsuokai	1	1	singleton
Catenovulum agarivorans	1	1	singleton
Catenulispora acidiphila	1	1	singleton
Catonella morbi	1	1	singleton
Caulobacter crescentus	2	1	clique
Caulobacter segnis	1	1	singleton
Caulobacter sp.	6	6	singleton
Caulobacter vibrioides	1	1	singleton
Cecembia lonarensis	1	1	singleton
Cedecea davisae	1	1	singleton
Celeribacter baekdonensis	1	1	singleton
Cellulomonas flavigena	2	2	singleton
Cellulomonas gilvus	1	1	singleton
Cellulomonas massiliensis	1	1	singleton
Cellulomonas sp.	2	2	singleton
Cellulophaga algicola	1	1	singleton
Cellulophaga lytica	1	1	singleton
Cellulosilyticum lentocellum	1	1	singleton
Cellulosimicrobium cellulans	5	2	clique + singleton
Cellvibrio japonicus	1	1	singleton
Cellvibrio sp.	1	1	singleton
Cenarchaeum symbiosum	1	1	singleton
Centipeda periodontii	1	1	singleton
Cesiribacter andamanensis	1	1	singleton
Chamaesiphon minutus	1	1	singleton
Chelativorans sp.	2	2	singleton
Chelatococcus sp.	1	1	singleton
Chitinibacter tainanensis	1	1	singleton
Chitinilyticum aquatile	1	1	singleton
Chitinilyticum litopenaei	1	1	singleton
Chitinimonas koreensis	1	1	singleton
Chitiniphilus shinanonensis	1	1	singleton
Chitinophaga pinensis	1	1	singleton
Chlamydia muridarum	4	1	clique
Chlamydia pecorum	3	1	clique
Chlamydia psittaci	30	2	clique
Chlamydia trachomatis	48	1	clique
Chlamydophila abortus	2	1	clique
Chlamydophila caviae	1	1	singleton
Chlamydophila felis	1	1	singleton
Chlamydophila pecorum	1	1	clique
Chlamydophila pneumoniae	5	1	clique
Chlamydophila psittaci	9	1	clique
Chlorobaculum limnaeum	1	1	singleton
Chlorobaculum parvum	1	1	singleton
Chlorobium chlorochromatii	1	1	singleton
Chlorobium ferrooxidans	1	1	singleton
Chlorobium limicola	1	1	singleton
Chlorobium phaeobacteroides	2	2	singleton
Chlorobium phaeovibrioides	1	1	singleton
Chlorobium tepidum	1	1	singleton
Chloroflexus aggregans	1	1	singleton
Chloroflexus aurantiacus	1	1	clique
Chloroflexus sp.	3	3	clique + singleton
Chlorogloeopsis fritschii	2	1	clique
Chlorogloeopsis sp.	1	1	clique
Chloroherpeton thalassium	1	1	singleton
Chromobacterium sp.	1	1	singleton
Chromobacterium violaceum	1	1	singleton
Chromohalobacter salexigens	1	1	singleton
Chroococcidiopsis sp.	1	1	singleton
Chroococcidiopsis thermalis	1	1	singleton
Chryseobacterium caeni	1	1	singleton
Chryseobacterium daeguense	1	1	singleton
Chryseobacterium gleum	1	1	singleton
Chryseobacterium gregarium	1	1	singleton
Chryseobacterium palustre	1	1	singleton
Chryseobacterium sp.	2	2	singleton
Chryseobacterium taeanense	1	1	clique
Chthoniobacter flavus	1	1	singleton
Chthonomonas calidirosea	1	1	singleton
Citreicella sp.	2	2	singleton
Citricoccus sp.	1	1	singleton
Citrobacter freundii	5	3	clique + singleton
Citrobacter koseri	1	1	singleton
Citrobacter rodentium	1	1	singleton
Citrobacter sp.	3	2	clique
Citrobacter youngae	1	1	singleton
Citromicrobium bathyomarinum	1	1	singleton
Citromicrobium sp.	1	1	singleton
Clavibacter michiganensis	3	3	singleton
Cloacibacillus evryensis	1	1	clique
Clostridium acetobutylicum	3	1	clique
Clostridium acidurici	1	1	singleton
Clostridium alkalicellulosi	1	1	singleton
Clostridium arbusti	1	1	singleton
Clostridium asparagiforme	1	1	singleton
Clostridium autoethanogenum	2	1	clique
Clostridium bartlettii	1	1	singleton
Clostridium beijerinckii	2	1	clique
Clostridium bifermentans	1	1	clique
Clostridium bolteae	6	1	clique
Clostridium botulinum	25	6	clique + clique group + singleton
Clostridium butyricum	6	1	clique
Clostridium cadaveris	1	1	singleton
Clostridium carboxidivorans	2	1	clique
Clostridium celatum	1	1	singleton
Clostridium cellulolyticum	1	1	singleton
Clostridium cellulovorans	2	1	clique
Clostridium cf. saccharolyticum	1	1	clique
Clostridium citroniae	1	1	singleton
Clostridium clariflavum	2	1	clique
Clostridium clostridioforme	10	3	clique + singleton
Clostridium colicanis	1	1	singleton
Clostridium difficile	109	1	clique
Clostridium diolis	1	1	clique
Clostridium glycolicum	2	1	clique
Clostridium halophilum	1	1	singleton
Clostridium hathewayi	3	3	singleton
Clostridium hiranonis	1	1	singleton
Clostridium hylemonae	1	1	singleton
Clostridium indolis	1	1	clique
Clostridium innocuum	1	1	clique
Clostridium josui	1	1	singleton
Clostridium kluyveri	2	1	clique
Clostridium ljungdahlii	1	1	clique
Clostridium methoxybenzovorans	1	1	clique
Clostridium methylpentosum	1	1	singleton
Clostridium nexile	1	1	singleton
Clostridium novyi	1	1	singleton
Clostridium papyrosolvens	1	1	singleton
Clostridium paraputrificum	1	1	singleton
Clostridium pasteurianum	2	2	clique + singleton
Clostridium perfringens	10	1	clique
Clostridium phytofermentans	1	1	singleton
Clostridium ragsdalei	1	1	singleton
Clostridium ramosum	1	1	clique
Clostridium saccharobutylicum	1	1	singleton
Clostridium saccharolyticum	1	1	singleton
Clostridium saccharoperbutylacetonicum	2	1	clique
Clostridium sartagoforme	1	1	singleton
Clostridium scindens	1	1	clique
Clostridium sordellii	1	1	singleton
Clostridium sp.	110	21	clique + singleton
Clostridium spiroforme	1	1	singleton
Clostridium sporogenes	2	2	singleton
Clostridium sporosphaeroides	1	1	singleton
Clostridium stercorarium	2	1	clique
Clostridium sticklandii	1	1	singleton
Clostridium symbiosum	2	1	clique
Clostridium termitidis	2	1	clique
Clostridium tetani	2	1	clique
Clostridium thermocellum	6	1	clique
Clostridium tunisiense	1	1	singleton
Clostridium tyrobutyricum	4	1	clique
Cohnella laeviribosi	1	1	singleton
Cohnella panacarvi	1	1	singleton
Cohnella thermotolerans	1	1	singleton
Collimonas fungivorans	1	1	singleton
Collinsella aerofaciens	1	1	singleton
Collinsella intestinalis	1	1	singleton
Collinsella sp.	1	1	singleton
Collinsella stercoris	1	1	singleton
Collinsella tanakaei	1	1	singleton
Colwellia piezophila	1	1	singleton
Colwellia psychrerythraea	1	1	singleton
Colwellia sp.	7	7	singleton
Comamonas badia	1	1	singleton
Comamonas composti	1	1	singleton
Comamonas sp.	1	1	singleton
Comamonas testosteroni	5	3	clique + singleton
Commensalibacter intestini	1	1	singleton
Conchiformibius kuhniae	1	1	singleton
Conexibacter woesei	2	2	singleton
Congregibacter litoralis	1	1	singleton
Coprobacillus sp.	5	2	clique
Coprococcus catus	1	1	singleton
Coprococcus eutactus	1	1	singleton
Coprococcus sp.	2	1	clique
Coprothermobacter platensis	1	1	singleton
Coprothermobacter proteolyticus	1	1	singleton
Coraliomargarita akajimensis	1	1	singleton
Corallococcus coralloides	1	1	singleton
Coriobacterium glomerans	1	1	singleton
Corynebacterium accolens	2	1	clique
Corynebacterium ammoniagenes	1	1	singleton
Corynebacterium amycolatum	1	1	singleton
Corynebacterium aurimucosum	2	1	clique
Corynebacterium bovis	1	1	singleton
Corynebacterium callunae	2	1	clique
Corynebacterium capitovis	1	1	singleton
Corynebacterium casei	1	1	singleton
Corynebacterium caspium	1	1	singleton
Corynebacterium ciconiae	1	1	singleton
Corynebacterium crenatum	1	1	clique
Corynebacterium diphtheriae	17	1	clique
Corynebacterium doosanense	1	1	singleton
Corynebacterium durum	1	1	singleton
Corynebacterium efficiens	2	1	clique
Corynebacterium freiburgense	1	1	singleton
Corynebacterium genitalium	1	1	singleton
Corynebacterium glucuronolyticum	2	1	clique
Corynebacterium glutamicum	10	1	clique
Corynebacterium halotolerans	1	1	singleton
Corynebacterium jeikeium	2	1	clique
Corynebacterium kroppenstedtii	1	1	singleton
Corynebacterium lipophiloflavum	1	1	singleton
Corynebacterium lubricantis	1	1	singleton
Corynebacterium maris	1	1	singleton
Corynebacterium massiliense	1	1	singleton
Corynebacterium mastitidis	1	1	singleton
Corynebacterium matruchotii	2	1	clique
Corynebacterium nuruki	1	1	singleton
Corynebacterium pilosum	1	1	singleton
Corynebacterium propinquum	1	1	singleton
Corynebacterium pseudogenitalium	1	1	singleton
Corynebacterium pseudotuberculosis	15	1	clique
Corynebacterium pyruviciproducens	1	1	singleton
Corynebacterium resistens	1	1	singleton
Corynebacterium sp.	2	2	singleton
Corynebacterium sputi	1	1	singleton
Corynebacterium striatum	1	1	singleton
Corynebacterium terpenotabidum	1	1	singleton
Corynebacterium timonense	1	1	singleton
Corynebacterium tuberculostearicum	1	1	singleton
Corynebacterium ulcerans	3	1	clique
Corynebacterium ulceribovis	1	1	singleton
Corynebacterium urealyticum	2	1	clique
Corynebacterium variabile	1	1	singleton
Coxiella burnetii	7	1	clique
Crinalium epipsammum	1	1	singleton
Croceibacter atlanticus	1	1	singleton
Crocosphaera watsonii	5	1	clique
Cronobacter condimenti	1	1	singleton
Cronobacter dublinensis	4	1	clique
Cronobacter malonaticus	2	1	clique
Cronobacter muytjensii	1	1	singleton
Cronobacter sakazakii	9	1	clique
Cronobacter sp.	1	1	singleton
Cronobacter turicensis	2	1	clique
Cronobacter universalis	2	1	clique
Cryocola sp.	1	1	clique
Cryptobacterium curtum	1	1	singleton
Cryptosporangium arvum	1	1	singleton
Cucumibacter marinus	1	1	singleton
Cupriavidus basilensis	1	1	singleton
Cupriavidus gilardii	1	1	singleton
Cupriavidus metallidurans	2	1	clique
Cupriavidus necator	3	3	singleton
Cupriavidus sp.	5	5	singleton
Cupriavidus taiwanensis	3	2	clique + singleton
Curtobacterium flaccumfaciens	1	1	singleton
Curtobacterium ginsengisoli	1	1	singleton
Curtobacterium sp.	3	3	singleton
Curvibacter gracilis	1	1	singleton
Curvibacter lanceolatus	1	1	singleton
Cyanobacterium aponinum	1	1	singleton
Cyanobacterium sp.	2	2	singleton
Cyanobacterium stanieri	1	1	singleton
Cyanobium gracile	1	1	singleton
Cyanobium sp.	1	1	singleton
Cyanothece sp.	8	6	clique + singleton
Cyclobacterium marinum	1	1	singleton
Cyclobacterium sp.	1	1	singleton
Cycloclasticus pugetii	1	1	clique
Cycloclasticus sp.	8	7	clique + singleton
Cycloclasticus zancles	1	1	clique
Cylindrospermopsis raciborskii	1	1	singleton
Cylindrospermum stagnale	1	1	singleton
Cytophaga aurantiaca	1	1	singleton
Cytophaga fermentans	1	1	singleton
Cytophaga hutchinsonii	1	1	singleton
Dactylococcopsis salina	1	1	singleton
Dasania marina	1	1	singleton
Dechlorobacter hydrogenophilus	1	1	singleton
Dechloromonas agitata	2	1	clique
Dechloromonas aromatica	1	1	singleton
Dechloromonas sp.	1	1	singleton
Deferribacter desulfuricans	1	1	singleton
Deferrisoma camini	1	1	singleton
Dehalobacter restrictus	1	1	singleton
Dehalobacter sp.	3	2	clique + singleton
Dehalococcoides ethenogenes	1	1	singleton
Dehalococcoides mccartyi	7	2	clique
Dehalogenimonas lykanthroporepellens	1	1	singleton
Deinococcus apachensis	1	1	singleton
Deinococcus aquatilis	1	1	singleton
Deinococcus deserti	1	1	singleton
Deinococcus ficus	1	1	clique
Deinococcus geothermalis	1	1	singleton
Deinococcus gobiensis	1	1	singleton
Deinococcus hopiensis	1	1	singleton
Deinococcus maricopensis	1	1	singleton
Deinococcus murrayi	1	1	singleton
Deinococcus peraridilitoris	1	1	singleton
Deinococcus pimensis	1	1	singleton
Deinococcus proteolyticus	1	1	singleton
Deinococcus radiodurans	1	1	singleton
Deinococcus sp.	1	1	clique
Deinococcus wulumuqiensis	1	1	singleton
Delftia acidovorans	3	2	clique
Delftia sp.	6	6	clique + singleton
Demetria terragena	1	1	singleton
Denitrovibrio acetiphilus	1	1	singleton
Dermabacter sp.	1	1	singleton
Dermacoccus sp.	1	1	singleton
Dermatophilus congolensis	1	1	singleton
Derxia gummosa	1	1	singleton
Desulfarculus baarsii	1	1	singleton
Desulfatibacillum aliphaticivorans	1	1	clique
Desulfatibacillum alkenivorans	1	1	clique
Desulfatirhabdium butyrativorans	1	1	singleton
Desulfitobacterium dehalogenans	1	1	clique
Desulfitobacterium dichloroeliminans	1	1	singleton
Desulfitobacterium hafniense	6	1	clique
Desulfitobacterium metallireducens	1	1	singleton
Desulfitobacterium sp.	2	2	clique
Desulfobacca acetoxidans	1	1	singleton
Desulfobacter curvatus	1	1	singleton
Desulfobacterium anilini	1	1	singleton
Desulfobacterium autotrophicum	1	1	singleton
Desulfobacterium postgatei	1	1	singleton
Desulfobacula toluolica	1	1	singleton
Desulfobulbus japonicus	1	1	singleton
Desulfobulbus mediterraneus	1	1	singleton
Desulfobulbus propionicus	1	1	singleton
Desulfobulbus sp.	3	3	singleton
Desulfocapsa sulfexigens	1	1	singleton
Desulfococcus oleovorans	1	1	singleton
Desulfocurvus vexinensis	1	1	singleton
Desulfohalobium retbaense	1	1	singleton
Desulfomicrobium baculatum	1	1	singleton
Desulfomicrobium escambiense	1	1	singleton
Desulfomonile tiedjei	1	1	singleton
Desulfonatronospira thiodismutans	1	1	singleton
Desulfonatronum lacustre	1	1	singleton
Desulfonema limicola	1	1	singleton
Desulfonispora thiosulfatigenes	1	1	singleton
Desulforegula conservatrix	1	1	singleton
Desulfosarcina sp.	1	1	singleton
Desulfosarcina variabilis	1	1	singleton
Desulfospira joergensenii	1	1	singleton
Desulfosporosinus acidiphilus	1	1	singleton
Desulfosporosinus meridiei	1	1	singleton
Desulfosporosinus orientis	1	1	singleton
Desulfosporosinus youngiae	1	1	singleton
Desulfotalea psychrophila	1	1	singleton
Desulfotignum balticum	1	1	clique
Desulfotignum phosphitoxidans	1	1	clique
Desulfotomaculum acetoxidans	1	1	singleton
Desulfotomaculum alcoholivorax	1	1	singleton
Desulfotomaculum carboxydivorans	1	1	clique
Desulfotomaculum gibsoniae	1	1	singleton
Desulfotomaculum guttoideum	1	1	clique
Desulfotomaculum hydrothermale	1	1	singleton
Desulfotomaculum kuznetsovii	1	1	singleton
Desulfotomaculum nigrificans	1	1	clique
Desulfotomaculum reducens	1	1	singleton
Desulfotomaculum ruminis	1	1	singleton
Desulfovibrio acrylicus	1	1	clique
Desulfovibrio aespoeensis	1	1	singleton
Desulfovibrio africanus	3	2	clique + singleton
Desulfovibrio alaskensis	2	1	clique
Desulfovibrio aminophilus	1	1	singleton
Desulfovibrio bastinii	1	1	singleton
Desulfovibrio cf. magneticus	1	1	singleton
Desulfovibrio cuneatus	1	1	singleton
Desulfovibrio desulfuricans	3	3	clique + singleton
Desulfovibrio fructosovorans	1	1	singleton
Desulfovibrio gigas	2	1	clique
Desulfovibrio hydrothermalis	2	1	clique
Desulfovibrio inopinatus	1	1	singleton
Desulfovibrio longus	1	1	singleton
Desulfovibrio magneticus	2	2	singleton
Desulfovibrio oxyclinae	1	1	singleton
Desulfovibrio piezophilus	1	1	singleton
Desulfovibrio piger	1	1	singleton
Desulfovibrio putealis	1	1	singleton
Desulfovibrio salexigens	1	1	singleton
Desulfovibrio sp.	6	5	clique + singleton
Desulfovibrio termitidis	1	1	singleton
Desulfovibrio vulgaris	3	2	clique + singleton
Desulfovibrio zosterae	1	1	singleton
Desulfovirgula thermocuniculi	1	1	singleton
Desulfurella acetivorans	1	1	singleton
Desulfurispirillum indicum	1	1	singleton
Desulfurispora thermophila	1	1	singleton
Desulfurivibrio alkaliphilus	1	1	singleton
Desulfurobacterium sp.	1	1	singleton
Desulfurobacterium thermolithotrophum	1	1	singleton
Desulfurococcus amylolyticus	1	1	clique
Desulfurococcus fermentans	1	1	clique
Desulfurococcus kamchatkensis	1	1	clique
Desulfurococcus mobilis	1	1	clique
Desulfurococcus mucosus	1	1	clique
Desulfuromonas acetoxidans	1	1	singleton
Dethiobacter alkaliphilus	1	1	singleton
Dethiosulfovibrio peptidovorans	1	1	singleton
Dialister invisus	1	1	singleton
Dialister microaerophilus	2	1	clique
Dialister succinatiphilus	1	1	singleton
Dichelobacter nodosus	1	1	singleton
Dickeya dadantii	3	3	singleton
Dickeya dianthicola	4	1	clique
Dickeya solani	4	1	clique
Dickeya sp.	1	1	clique
Dickeya zeae	3	3	clique + singleton
Dictyoglomus thermophilum	1	1	singleton
Dictyoglomus turgidum	1	1	singleton
Dielma fastidiosa	1	1	singleton
Dietzia alimentaria	1	1	singleton
Dietzia cinnamea	1	1	singleton
Dietzia sp.	1	1	singleton
Dinoroseobacter shibae	1	1	singleton
Dokdonia donghaensis	1	1	singleton
Dolosigranulum pigrum	1	1	singleton
Donghaeana dokdonensis	1	1	singleton
Donghicola xiamenensis	1	1	singleton
Dorea formicigenerans	2	1	clique
Dorea longicatena	2	2	singleton
Dorea sp.	1	1	clique
Duganella violaceinigra	1	1	singleton
Duganella zoogloeoides	1	1	singleton
Dyadobacter alkalitolerans	1	1	singleton
Dyadobacter beijingensis	1	1	singleton
Dyadobacter fermentans	1	1	singleton
Dyella ginsengisoli	1	1	singleton
Dyella japonica	1	1	singleton
Dysgonomonas capnocytophagoides	1	1	singleton
Dysgonomonas gadei	1	1	singleton
Dysgonomonas mossii	2	1	clique
Echinicola pacifica	1	1	singleton
Echinicola vietnamensis	1	1	singleton
Ectothiorhodospira haloalkaliphila	1	1	singleton
Edwardsiella ictaluri	2	1	clique
Edwardsiella tarda	7	3	clique + singleton
Eggerthella lenta	1	1	clique
Eggerthella sp.	3	2	clique + singleton
Eggerthia catenefornis	1	1	clique
Ehrlichia canis	1	1	singleton
Ehrlichia chaffeensis	2	1	clique
Ehrlichia muris	1	1	singleton
Elioraea tepidiphila	1	1	singleton
Elizabethkingia anophelis	2	1	clique
Elizabethkingia meningoseptica	1	1	singleton
Elusimicrobium minutum	1	1	singleton
Empedobacter brevis	1	1	singleton
Emticicia oligotrophica	1	1	singleton
Endozoicomonas elysicola	1	1	singleton
Enhydrobacter aerosaccus	1	1	singleton
Enorma massiliensis	1	1	singleton
Ensifer arboris	1	1	singleton
Ensifer fredii	3	3	singleton
Ensifer medicae	6	1	clique
Ensifer meliloti	18	1	clique
Ensifer sp.	4	4	singleton
Ensifer terangae	1	1	singleton
Enterobacter aerogenes	3	1	clique
Enterobacter cancerogenus	2	2	clique + singleton
Enterobacter cloacae	13	9	clique + singleton
Enterobacter hormaechei	3	2	clique + singleton
Enterobacter massiliensis	1	1	singleton
Enterobacter mori	1	1	clique
Enterobacter radicincitans	1	1	singleton
Enterobacter sp.	6	5	clique + singleton
Enterococcus asini	1	1	singleton
Enterococcus avium	2	1	clique
Enterococcus caccae	1	1	singleton
Enterococcus casseliflavus	6	2	clique
Enterococcus cecorum	2	1	clique
Enterococcus columbae	3	1	clique
Enterococcus dispar	2	1	clique
Enterococcus durans	3	2	clique
Enterococcus faecalis	101	3	clique + clique group + singleton
Enterococcus faecium	101	4	clique + clique group
Enterococcus gallinarum	1	1	clique
Enterococcus gilvus	1	1	singleton
Enterococcus haemoperoxidus	1	1	singleton
Enterococcus hirae	2	1	clique
Enterococcus italicus	1	1	singleton
Enterococcus malodoratus	1	1	singleton
Enterococcus moraviensis	1	1	singleton
Enterococcus mundtii	1	1	singleton
Enterococcus pallens	1	1	singleton
Enterococcus phoeniculicola	1	1	singleton
Enterococcus raffinosus	2	1	clique
Enterococcus saccharolyticus	3	2	clique
Enterococcus sp.	8	4	clique + clique group
Enterococcus sulfureus	2	1	clique
Enterococcus villorum	1	1	singleton
Enterorhabdus mucosicola	1	1	singleton
Enterovibrio calviensis	3	1	clique
Enterovibrio norvegicus	3	1	clique
Enterovibrio sp.	1	1	singleton
Entomoplasma lucivorax	1	1	singleton
Entomoplasma luminosum	1	1	singleton
Entomoplasma somnilux	1	1	singleton
Epilithonimonas tenax	1	1	singleton
Epsilonproteobacteria unclassified	5	5	singleton
Eremococcus coleocola	2	1	clique
Erwinia amylovora	3	1	clique
Erwinia billingiae	1	1	singleton
Erwinia pyrifoliae	2	1	clique
Erwinia sp.	1	1	clique
Erwinia tasmaniensis	1	1	singleton
Erwinia toletana	1	1	singleton
Erwinia tracheiphila	1	1	singleton
Erysipelothrix rhusiopathiae	2	1	clique
Erysipelothrix tonsillarum	1	1	singleton
Erythrobacter litoralis	1	1	singleton
Erythrobacter sp.	2	2	singleton
Escherichia albertii	3	1	clique
Escherichia blattae	1	1	clique
Escherichia coli	1243	3	clique + clique group
Escherichia fergusonii	3	1	clique
Escherichia hermannii	1	1	singleton
Escherichia sp.	11	5	clique + clique group + singleton
Ethanoligenens harbinense	1	1	singleton
Eubacteriaceae bacterium sp.	1	1	clique
Eubacterium biforme	1	1	singleton
Eubacterium cellulosolvens	1	1	singleton
Eubacterium cylindroides	1	1	singleton
Eubacterium dolichum	1	1	singleton
Eubacterium eligens	1	1	singleton
Eubacterium hallii	1	1	singleton
Eubacterium infirmum	1	1	singleton
Eubacterium limosum	1	1	singleton
Eubacterium rectale	3	1	clique
Eubacterium saburreum	2	1	clique
Eubacterium saphenum	1	1	singleton
Eubacterium siraeum	4	1	clique
Eubacterium sp.	5	4	clique
Eubacterium ventriosum	1	1	singleton
Eubacterium xylanophilum	1	1	singleton
Eubacterium yurii	1	1	clique
Eudoraea adriatica	1	1	singleton
Eudoraea uncultured	5	5	singleton
Exiguobacterium antarcticum	1	1	singleton
Exiguobacterium sibiricum	1	1	singleton
Exiguobacterium sp.	4	4	singleton
Facklamia hominis	2	1	clique
Facklamia ignava	1	1	singleton
Facklamia languida	1	1	singleton
Facklamia sourekii	1	1	singleton
Faecalibacterium prausnitzii	5	4	clique + singleton
Fangia hongkongensis	1	1	clique
Fangia hongkongiensis	1	1	clique
Ferrimonas balearica	1	1	singleton
Ferrimonas futtsuensis	1	1	singleton
Ferrimonas kyonanensis	1	1	singleton
Ferrimonas senticii	1	1	singleton
Ferroglobus placidus	1	1	singleton
Ferroplasma acidarmanus	1	1	singleton
Fervidicoccus fontis	1	1	singleton
Fervidobacterium nodosum	1	1	singleton
Fervidobacterium pennivorans	1	1	singleton
Fibrella aestuarina	1	1	singleton
Fibrisoma limi	1	1	singleton
Fibrobacter succinogenes	2	1	clique
Filifactor alocis	1	1	singleton
Finegoldia magna	5	2	clique + singleton
Firmicutes sp.	1	1	singleton
Fischerella muscicola	2	2	singleton
Fischerella sp.	4	4	clique + singleton
Fischerella thermalis	1	1	clique
Flavobacterium antarcticum	1	1	singleton
Flavobacterium branchiophilum	1	1	singleton
Flavobacterium columnare	1	1	singleton
Flavobacterium daejeonense	1	1	singleton
Flavobacterium denitrificans	1	1	singleton
Flavobacterium filum	1	1	singleton
Flavobacterium frigidarium	1	1	singleton
Flavobacterium frigoris	1	1	singleton
Flavobacterium gelidilacus	1	1	singleton
Flavobacterium indicum	1	1	singleton
Flavobacterium johnsoniae	1	1	singleton
Flavobacterium psychrophilum	1	1	singleton
Flavobacterium rivuli	1	1	singleton
Flavobacterium soli	1	1	singleton
Flavobacterium sp.	9	9	singleton
Flavobacterium subsaxonicum	1	1	singleton
Flavobacterium suncheonense	1	1	singleton
Flavobacterium tegetincola	1	1	singleton
Flavonifractor plautii	1	1	singleton
Flectobacillus major	1	1	singleton
Flexibacter elegans	1	1	singleton
Flexibacter litoralis	1	1	singleton
Flexibacter roseolus	1	1	singleton
Flexistipes sinusarabici	1	1	singleton
Flexithrix dorotheae	1	1	singleton
Fluoribacter dumoffii	2	1	clique
Fluviicola taffensis	1	1	singleton
Fodinicurvata sediminis	1	1	singleton
Formosa sp.	1	1	singleton
Francisella hispaniensis	1	1	clique
Francisella noatunensis	6	2	clique + singleton
Francisella novicida	4	2	clique
Francisella philomiragia	6	1	clique
Francisella sp.	1	1	singleton
Francisella tularensis	55	1	clique
Frankia alni	1	1	singleton
Frankia sp.	10	10	singleton
Frateuria aurantia	1	1	singleton
Fremyella diplosiphon	1	1	singleton
Fructobacillus fructosus	1	1	singleton
Fulvimarina pelagi	1	1	singleton
Fulvivirga imtechensis	1	1	singleton
Fusobacterium gonidiaformans	1	1	clique
Fusobacterium mortiferum	1	1	singleton
Fusobacterium necrophorum	2	1	clique
Fusobacterium nucleatum	10	4	clique + singleton
Fusobacterium periodonticum	2	2	clique + singleton
Fusobacterium russii	1	1	singleton
Fusobacterium sp.	16	8	clique + singleton
Fusobacterium ulcerans	1	1	clique
Fusobacterium varium	1	1	singleton
Gaetbulibacter saemankumensis	1	1	singleton
Galbibacter sp.	1	1	singleton
Gallibacterium anatis	2	1	clique
Gallionella capsiferriformans	1	1	singleton
Gardnerella vaginalis	32	8	clique + clique group + singleton
Gayadomonas joobiniege	1	1	singleton
Geitlerinema sp.	2	2	singleton
Gelidibacter mesophilus	1	1	singleton
Gemella cuniculi	1	1	singleton
Gemella haemolysans	2	2	singleton
Gemella moribillum	1	1	singleton
Gemella sanguinis	1	1	singleton
Geminicoccus roseus	1	1	singleton
Geminocystis herdmanii	1	1	singleton
Gemmata obscuriglobus	1	1	singleton
Gemmatimonas aurantiaca	1	1	singleton
Geobacillus Geobacillus	1	1	clique
Geobacillus caldoxylosilyticus	2	2	clique + singleton
Geobacillus debilis	2	1	clique
Geobacillus kaustophilus	1	1	clique group
Geobacillus sp.	9	6	clique + clique group + singleton
Geobacillus thermocatenulatus	1	1	clique group
Geobacillus thermodenitrificans	2	1	clique
Geobacillus thermoglucosidasius	2	1	clique
Geobacter bemidjiensis	1	1	singleton
Geobacter bremensis	1	1	singleton
Geobacter lovleyi	1	1	singleton
Geobacter metallireducens	1	1	singleton
Geobacter sp.	3	3	singleton
Geobacter sulfurreducens	2	1	clique
Geobacter uraniireducens	1	1	singleton
Geodermatophilus obscurus	1	1	singleton
Geopsychrobacter electrodiphilus	1	1	singleton
Geothrix fermentans	1	1	singleton
Geovibrio sp.	1	1	singleton
Gillisia limnaea	1	1	singleton
Gillisia sp.	3	3	singleton
Gilvimarinus chinensis	1	1	singleton
Glaciecola agarilytica	2	1	clique
Glaciecola arctica	1	1	singleton
Glaciecola chathamensis	1	1	clique
Glaciecola lipolytica	1	1	singleton
Glaciecola mesophila	1	1	singleton
Glaciecola nitratireducens	1	1	singleton
Glaciecola pallidula	2	1	clique
Glaciecola polaris	1	1	singleton
Glaciecola psychrophila	2	1	clique
Glaciecola punicea	1	1	singleton
Glaciecola sp.	1	1	singleton
Glaciibacter superstes	1	1	singleton
Globicatella sulfidifaciens	1	1	singleton
Gloeobacter violaceus	1	1	singleton
Gloeocapsa sp.	2	2	singleton
Gluconacetobacter diazotrophicus	2	1	clique
Gluconacetobacter europaeus	3	1	clique
Gluconacetobacter hansenii	1	1	singleton
Gluconacetobacter oboediens	1	1	singleton
Gluconacetobacter sp.	1	1	singleton
Gluconacetobacter xylinus	1	1	singleton
Gluconobacter frateurii	1	1	singleton
Gluconobacter morbifer	1	1	singleton
Gluconobacter oxydans	3	2	clique + singleton
Gluconobacter thailandicus	1	1	clique
Glycomyces arizonensis	1	1	singleton
Glycomyces tenuis	1	1	singleton
Gordonia aichiensis	1	1	singleton
Gordonia alkanivorans	1	1	singleton
Gordonia amarae	1	1	singleton
Gordonia amicalis	1	1	singleton
Gordonia araii	1	1	singleton
Gordonia bronchialis	1	1	singleton
Gordonia effusa	1	1	singleton
Gordonia hirsuta	1	1	singleton
Gordonia kroppenstedtii	1	1	singleton
Gordonia malaquae	1	1	singleton
Gordonia namibiensis	1	1	clique
Gordonia neofelifaecis	1	1	singleton
Gordonia otitidis	1	1	singleton
Gordonia paraffinivorans	1	1	singleton
Gordonia polyisoprenivorans	3	1	clique
Gordonia rhizosphera	1	1	singleton
Gordonia rubripertincta	1	1	singleton
Gordonia shandongensis	1	1	singleton
Gordonia sihwensis	1	1	singleton
Gordonia soli	1	1	singleton
Gordonia sp.	2	2	clique + singleton
Gordonia sputi	1	1	singleton
Gordonia terrae	2	2	clique + singleton
Gordonia westfalica	1	1	clique
Gracilibacillus halophilus	1	1	singleton
Gracilibacillus lacisalsi	1	1	singleton
Gracilimonas tropica	1	1	singleton
Gramella echinicola	1	1	singleton
Gramella forsetii	1	1	singleton
Gramella portivictoriae	1	1	singleton
Granulibacter bethesdensis	1	1	singleton
Granulicatella adiacens	1	1	singleton
Granulicatella elegans	1	1	singleton
Granulicella mallensis	1	1	singleton
Granulicella tundricola	1	1	singleton
Granulicoccus phenolivorans	1	1	singleton
Grimontia hollisae	1	1	singleton
Gulosibacter molinativorax	1	1	singleton
Haemophilus aegyptius	1	1	clique
Haemophilus ducreyi	5	1	clique
Haemophilus haemolyticus	6	6	singleton
Haemophilus influenzae	19	2	clique + singleton
Haemophilus parahaemolyticus	1	1	singleton
Haemophilus parainfluenzae	5	4	clique + singleton
Haemophilus paraphrohaemolyticus	1	1	singleton
Haemophilus parasuis	3	1	clique
Haemophilus pittmaniae	1	1	singleton
Haemophilus sp.	2	2	clique + singleton
Haemophilus sputorum	1	1	clique
Hafnia alvei	1	1	singleton
Hahella chejuensis	1	1	singleton
Hahella ganghwensis	1	1	singleton
Haladaptatus paucihalophilus	3	1	clique
Halalkalibacillus halophilus	1	1	singleton
Halalkalicoccus jeotgali	3	1	clique
Halanaerobium hydrogenoformans	1	1	singleton
Halanaerobium praevalens	1	1	singleton
Haliangium ochraceum	1	1	singleton
Haliea salexigens	1	1	singleton
Haliscomenobacter hydrossis	1	1	singleton
Hallella seregens	1	1	clique
Haloarcula amylolytica	1	1	singleton
Haloarcula argentinensis	1	1	singleton
Haloarcula californiae	2	1	clique
Haloarcula hispanica	1	1	singleton
Haloarcula japonica	1	1	singleton
Haloarcula marismortui	1	1	clique
Haloarcula sinaiiensis	2	1	clique
Haloarcula vallismortis	2	1	clique
Halobacillus halophilus	1	1	singleton
Halobacillus kuroshimensis	1	1	singleton
Halobacillus sp.	1	1	singleton
Halobacterium salinarum	1	1	clique
Halobacterium sp.	2	2	clique + singleton
Halobacteroides halobius	1	1	singleton
Halobaculum sp.	1	1	singleton
Halobiforma lacisalsi	2	1	clique
Halobiforma nitratireducens	1	1	singleton
Halococcus hamelinensis	2	1	clique
Halococcus saccharolyticus	1	1	singleton
Halococcus salifodinae	1	1	singleton
Halococcus thailandensis	1	1	singleton
Haloferax alexandrinus	1	1	clique
Haloferax denitrificans	2	1	clique
Haloferax elongans	1	1	singleton
Haloferax gibbonsii	1	1	clique
Haloferax larsenii	1	1	singleton
Haloferax lucentense	1	1	clique
Haloferax mediterranei	1	1	clique
Haloferax mucosum	2	1	clique
Haloferax prahovense	1	1	clique
Haloferax sp.	4	1	clique
Haloferax sulfurifontis	2	1	clique
Haloferax volcanii	4	2	clique
Halogeometricum borinquense	2	1	clique
Haloglycomyces albus	1	1	singleton
Halogranum salarium	1	1	singleton
Halomicrobium katesii	1	1	clique
Halomicrobium mukohataei	1	1	clique
Halomonas anticariensis	1	1	singleton
Halomonas boliviensis	1	1	singleton
Halomonas elongata	1	1	singleton
Halomonas halocynthiae	1	1	singleton
Halomonas jeotgali	1	1	singleton
Halomonas lutea	1	1	singleton
Halomonas smyrnensis	1	1	singleton
Halomonas sp.	6	6	singleton
Halomonas stevensii	1	1	singleton
Halomonas zhanjiangensis	1	1	singleton
Halonatronum saccharophilum	1	1	singleton
Halonotius sp.	2	2	singleton
Halopiger xanaduensis	1	1	singleton
Haloplanus natans	1	1	singleton
Haloplasma contractile	1	1	singleton
Haloquadratum sp.	1	1	singleton
Haloquadratum walsbyi	4	3	clique + singleton
Halorhabdus tiamatea	1	1	singleton
Halorhabdus utahensis	1	1	singleton
Halorhodospira halophila	1	1	singleton
Halorubrum aidingense	1	1	singleton
Halorubrum arcis	1	1	clique
Halorubrum coriense	1	1	singleton
Halorubrum distributum	2	1	clique
Halorubrum ezzemoulense	1	1	singleton
Halorubrum hochstenium	1	1	singleton
Halorubrum kocurii	1	1	singleton
Halorubrum lacusprofundi	1	1	singleton
Halorubrum lipolyticum	1	1	singleton
Halorubrum litoreum	1	1	clique
Halorubrum sp.	3	3	singleton
Halorubrum tebenquichense	1	1	singleton
Halorubrum terrestre	1	1	clique
Halosarcina pallida	1	1	singleton
Halosimplex carlsbadense	1	1	singleton
Halostagnicola larsenii	1	1	singleton
Haloterrigena limicola	1	1	singleton
Haloterrigena salina	1	1	singleton
Haloterrigena thermotolerans	1	1	singleton
Haloterrigena turkmenica	1	1	singleton
Halothece sp.	1	1	singleton
Halothermothrix orenii	1	1	singleton
Halothiobacillus neapolitanus	1	1	singleton
Halovivax asiaticus	1	1	singleton
Halovivax ruber	1	1	singleton
Hamadaea tsunoensis	1	1	singleton
Helcococcus kunzii	1	1	singleton
Helcococcus sueciensis	1	1	singleton
Helicobacter acinonychis	1	1	singleton
Helicobacter bilis	1	1	singleton
Helicobacter bizzozeronii	1	1	singleton
Helicobacter canadensis	2	1	clique
Helicobacter cetorum	2	2	singleton
Helicobacter cinaedi	3	1	clique
Helicobacter felis	1	1	singleton
Helicobacter hepaticus	1	1	singleton
Helicobacter mustelae	1	1	singleton
Helicobacter pametensis	1	1	singleton
Helicobacter pullorum	1	1	singleton
Helicobacter pylori	243	60	clique + clique group + singleton
Helicobacter sp.	2	1	clique group
Helicobacter suis	2	1	clique
Helicobacter winghamensis	1	1	singleton
Heliobacterium modesticaldum	1	1	singleton
Hellea balneolensis	1	1	singleton
Henriciella marina	1	1	singleton
Herbaspirillum frisingense	1	1	singleton
Herbaspirillum huttiense	1	1	clique
Herbaspirillum lusitanum	1	1	singleton
Herbaspirillum massiliense	1	1	singleton
Herbaspirillum seropedicae	3	2	clique + singleton
Herminiimonas arsenicoxydans	1	1	singleton
Herpetosiphon aurantiacus	1	1	singleton
Hippea alviniae	1	1	singleton
Hippea maritima	1	1	singleton
Hippea medeae	1	1	singleton
Hirschia baltica	1	1	singleton
Hirschia maritima	1	1	singleton
Histophilus somni	2	1	clique
Hoeflea phototrophica	1	1	singleton
Hoeflea sp.	1	1	singleton
Holdemania filiformis	1	1	singleton
Holdemania massiliensis	1	1	singleton
Holophaga foetida	1	1	singleton
Holospora undulata	1	1	singleton
Hongiella marincola	1	1	singleton
Humibacter albus	1	1	singleton
Hydrocarboniphaga effusa	1	1	singleton
Hydrogenobacter thermophilus	2	1	clique
Hydrogenobaculum sp.	5	2	clique + singleton
Hydrogenophaga sp.	1	1	singleton
Hylemonella gracilis	1	1	singleton
Hymenobacter aerophilus	1	1	singleton
Hymenobacter norwichensis	1	1	singleton
Hymenobacter roseosalivarius	1	1	singleton
Hyperthermus butylicus	1	1	singleton
Hyphomicrobium denitrificans	2	2	singleton
Hyphomicrobium sp.	4	3	clique + singleton
Hyphomicrobium sulfonivorans	1	1	singleton
Hyphomicrobium zavarzinii	1	1	singleton
Hyphomonas neptunium	1	1	singleton
Ideonella sp.	1	1	singleton
Idiomarina baltica	1	1	singleton
Idiomarina loihiensis	2	1	clique
Idiomarina sediminum	1	1	singleton
Idiomarina sp.	2	2	singleton
Idiomarina xiamenensis	1	1	singleton
Ignatzschineria larvae	1	1	singleton
Ignavibacterium album	1	1	singleton
Ignicoccus hospitalis	1	1	singleton
Ignisphaera aggregans	1	1	singleton
Ilumatobacter coccineum	1	1	singleton
Ilyobacter polytropus	1	1	singleton
Imtechella halotolerans	1	1	singleton
Indibacter alkaliphilus	1	1	singleton
Inquilinus limosus	1	1	singleton
Intrasporangium calvum	1	1	singleton
Isoptericola variabilis	3	1	clique
Janibacter hoylei	1	1	singleton
Janibacter sp.	1	1	singleton
Jannaschia sp.	1	1	singleton
Janthinobacterium lividum	1	1	singleton
Janthinobacterium sp.	3	3	singleton
Jeotgalicoccus marinus	1	1	singleton
Jeotgalicoccus psychrophilus	1	1	singleton
Jiangella gansuensis	1	1	singleton
Johnsonella ignava	1	1	singleton
Jonesia denitrificans	1	1	singleton
Jonesia quinghaiensis	1	1	singleton
Jonquetella anthropi	2	1	clique
Joostella marina	1	1	singleton
Kaistia adipata	1	1	singleton
Kaistia granuli	1	1	singleton
Kallipyga massiliensis	1	1	singleton
Kangiella aquimarina	1	1	singleton
Kangiella koreensis	1	1	singleton
Ketogulonicigenium vulgare	2	1	clique
Kiloniella laminariae	1	1	singleton
Kineococcus radiotolerans	1	1	singleton
Kineosphaera limosa	1	1	singleton
Kingella denitrificans	1	1	singleton
Kingella kingae	3	1	clique
Kitasatospora setae	1	1	singleton
Klebsiella oxytoca	10	5	clique + singleton
Klebsiella pneumoniae	109	3	clique + clique group
Klebsiella sp.	10	6	clique + clique group + singleton
Klebsiella variicola	1	1	clique
Kocuria palustris	1	1	clique
Kocuria rhizophila	2	2	singleton
Kocuria sp.	1	1	singleton
Kordia algicida	1	1	singleton
Kordiimonas gwangyangensis	1	1	singleton
Kosmotoga olearia	1	1	singleton
Kribbella catacumbae	1	1	singleton
Kribbella flavida	1	1	singleton
Krokinobacter diaphorus	1	1	singleton
Ktedonobacter racemifer	1	1	singleton
Kurthia sp.	3	3	singleton
Kushneria aurantia	1	1	singleton
Kyrpidia tusciae	1	1	singleton
Kytococcus sedentarius	1	1	singleton
Labrenzia aggregata	1	1	singleton
Labrenzia alexandrii	1	1	singleton
Labrenzia sp.	1	1	singleton
Labrys methylaminiphilus	1	1	singleton
Lachnobacterium bovis	1	1	singleton
Lachnospira multipara	1	1	singleton
Lacinutrix algicola	1	1	singleton
Lacticigenium naphtae	1	1	singleton
Lactobacillus acidipiscis	1	1	singleton
Lactobacillus acidophilus	5	2	clique
Lactobacillus amylolyticus	1	1	singleton
Lactobacillus amylovorus	2	1	clique
Lactobacillus animalis	1	1	singleton
Lactobacillus antri	1	1	singleton
Lactobacillus brevis	5	2	clique
Lactobacillus buchneri	5	2	clique
Lactobacillus casei	22	1	clique
Lactobacillus catenaformis	1	1	clique
Lactobacillus ceti	1	1	singleton
Lactobacillus coleohominis	1	1	singleton
Lactobacillus coryniformis	3	1	clique
Lactobacillus crispatus	10	1	clique
Lactobacillus curvatus	1	1	singleton
Lactobacillus delbrueckii	10	1	clique
Lactobacillus equicursoris	1	1	clique
Lactobacillus farciminis	1	1	singleton
Lactobacillus fermentum	5	1	clique
Lactobacillus florum	1	1	singleton
Lactobacillus fructivorans	1	1	singleton
Lactobacillus gasseri	9	2	clique
Lactobacillus harbinensis	1	1	singleton
Lactobacillus helveticus	5	1	clique
Lactobacillus hilgardii	1	1	clique
Lactobacillus hominis	1	1	singleton
Lactobacillus iners	14	1	clique
Lactobacillus ingluviei	1	1	singleton
Lactobacillus jensenii	6	2	clique
Lactobacillus johnsonii	5	1	clique group
Lactobacillus kefiranofaciens	1	1	singleton
Lactobacillus kisonensis	1	1	singleton
Lactobacillus malefermentans	1	1	singleton
Lactobacillus mali	2	1	clique
Lactobacillus mucosae	1	1	singleton
Lactobacillus oris	2	1	clique
Lactobacillus parabrevis	1	1	singleton
Lactobacillus paracasei	10	1	clique
Lactobacillus parafarraginis	1	1	singleton
Lactobacillus plantarum	8	1	clique
Lactobacillus pobuzihii	1	1	singleton
Lactobacillus psittaci	1	1	singleton
Lactobacillus reuteri	11	4	clique + clique group + singleton
Lactobacillus rhamnosus	11	1	clique
Lactobacillus rossiae	2	1	clique
Lactobacillus ruminis	4	1	clique
Lactobacillus saerimneri	2	1	clique
Lactobacillus sakei	2	1	clique
Lactobacillus salivarius	6	1	clique
Lactobacillus sanfranciscensis	1	1	singleton
Lactobacillus sp.	9	8	clique + clique group + singleton
Lactobacillus suebicus	1	1	singleton
Lactobacillus ultunensis	1	1	singleton
Lactobacillus vaginalis	1	1	singleton
Lactobacillus versmoldensis	1	1	singleton
Lactobacillus vini	1	1	singleton
Lactobacillus zeae	1	1	singleton
Lactococcus garvieae	13	4	clique + singleton
Lactococcus lactis	12	2	clique
Lamprocystis purpurea	1	1	singleton
Laribacter hongkongensis	2	1	clique
Lautropia mirabilis	1	1	singleton
Lawsonia intracellularis	2	1	clique
Leadbetterella byssophila	1	1	singleton
Leeia oryzae	1	1	singleton
Leeuwenhoekiella blandensis	1	1	singleton
Legionella anisa	1	1	singleton
Legionella drancourtii	1	1	singleton
Legionella longbeachae	2	1	clique
Legionella moravica	1	1	singleton
Legionella pneumophila	12	1	clique
Legionella shakespearei	1	1	singleton
Leifsonia sp.	2	2	clique + singleton
Leifsonia xyli	2	2	singleton
Leisingera aquimarina	1	1	singleton
Leisingera methylohalidivorans	1	1	singleton
Leisingera nanhaiensis	1	1	singleton
Leminorella grimontii	1	1	singleton
Lentibacillus sp.	1	1	singleton
Lentisphaera araneosa	1	1	singleton
Leptolyngbya boryana	1	1	singleton
Leptolyngbya sp.	4	4	singleton
Leptonema illini	1	1	singleton
Leptospira alexanderi	1	1	singleton
Leptospira alstoni	2	1	clique
Leptospira biflexa	2	1	clique
Leptospira borgpetersenii	18	2	clique
Leptospira broomii	1	1	singleton
Leptospira fainei	1	1	singleton
Leptospira inadai	1	1	singleton
Leptospira interrogans	196	3	clique
Leptospira kirschneri	26	2	clique
Leptospira kmetyi	1	1	singleton
Leptospira licerasiae	4	1	clique
Leptospira meyeri	2	1	clique
Leptospira noguchii	7	1	clique
Leptospira santarosai	24	3	clique
Leptospira terpstrae	1	1	singleton
Leptospira vanthielii	1	1	singleton
Leptospira weilii	8	3	clique + singleton
Leptospira wolbachii	1	1	singleton
Leptospira wolffii	1	1	singleton
Leptospira yanagawae	1	1	singleton
Leptospirillum ferriphilum	1	1	singleton
Leptospirillum ferrooxidans	1	1	singleton
Leptothrix cholodnii	1	1	singleton
Leptotrichia buccalis	1	1	singleton
Leptotrichia goodfellowii	2	1	clique
Leptotrichia hofstadii	2	1	clique
Leptotrichia shahii	1	1	singleton
Leptotrichia trevisanii	1	1	singleton
Leptotrichia wadei	1	1	singleton
Leucobacter chironomi	1	1	singleton
Leucobacter chromiiresistens	1	1	singleton
Leucobacter sp.	1	1	singleton
Leuconostoc argentinum	1	1	singleton
Leuconostoc carnosum	1	1	singleton
Leuconostoc citreum	4	1	clique
Leuconostoc gasicomitatum	1	1	clique
Leuconostoc gelidum	2	1	clique
Leuconostoc inhae	1	1	clique
Leuconostoc kimchii	3	2	clique + singleton
Leuconostoc mesenteroides	3	1	clique
Leuconostoc pseudomesenteroides	1	1	singleton
Leucothrix mucor	1	1	singleton
Lewinella cohaerens	1	1	singleton
Lewinella persica	1	1	singleton
Limnobacter sp.	1	1	singleton
Listeria fleischmannii	1	1	singleton
Listeria grayi	1	1	singleton
Listeria innocua	4	1	clique
Listeria ivanovii	2	2	singleton
Listeria marthii	1	1	singleton
Listeria monocytogenes	41	4	clique + clique group + singleton
Listeria seeligeri	3	1	clique
Listeria welshimeri	1	1	singleton
Listonella anguillarum	2	1	clique group
Litoreibacter arenae	1	1	singleton
Loktanella hongkongensis	1	1	singleton
Loktanella sp.	2	2	singleton
Loktanella vestfoldensis	2	2	singleton
Longispora albida	1	1	singleton
Luteibacter sp.	1	1	singleton
Luteimonas mephitis	1	1	singleton
Luteimonas sp.	2	1	clique
Lyngbya majuscula	1	1	singleton
Lyngbya sp.	1	1	singleton
Lysinibacillus fusiformis	2	1	clique
Lysinibacillus sp.	1	1	singleton
Lysinibacillus sphaericus	1	1	singleton
Lysobacter antibioticus	1	1	singleton
Lysobacter defluvii	1	1	singleton
Lysobacter sp.	2	2	clique + singleton
Macrococcus caseolyticus	1	1	singleton
Magnetococcus sp.	1	1	singleton
Magnetospirillum magneticum	1	1	singleton
Mahella australiensis	1	1	singleton
Mannheimia haemolytica	10	1	clique
Mannheimia sp.	1	1	clique
Maribacter sp.	1	1	singleton
Maricaulis maris	1	1	singleton
Maricaulis sp.	1	1	singleton
Marichromatium purpuratum	1	1	singleton
Marinactinospora thermotolerans	1	1	singleton
Marinilabilia salmonicolor	1	1	singleton
Marinimicrobium agarilyticum	1	1	singleton
Mariniradius saccharolyticus	1	1	singleton
Marinithermus hydrothermalis	1	1	singleton
Marinitoga piezophila	1	1	singleton
Marinobacter adhaerens	1	1	singleton
Marinobacter algicola	1	1	singleton
Marinobacter aquaeolei	1	1	clique
Marinobacter daepoensis	1	1	singleton
Marinobacter hydrocarbonoclasticus	1	1	clique
Marinobacter lipolyticus	1	1	singleton
Marinobacter manganoxydans	1	1	singleton
Marinobacter nanhaiticus	1	1	singleton
Marinobacter santoriniensis	1	1	singleton
Marinobacter sp.	2	2	singleton
Marinobacterium litorale	1	1	singleton
Marinobacterium rhizophilum	1	1	singleton
Marinobacterium stanieri	1	1	singleton
Marinococcus halotolerans	1	1	singleton
Marinomonas mediterranea	1	1	singleton
Marinomonas posidonica	1	1	singleton
Marinomonas sp.	3	3	singleton
Marinospirillum minutulum	1	1	singleton
Mariprofundus ferrooxydans	2	1	clique
Maritalea myrionectae	1	1	singleton
Maritimibacter alkaliphilus	1	1	singleton
Maritimibacter sp.	1	1	singleton
Marivirga tractuosa	1	1	singleton
Marmoricola sp.	1	1	singleton
Martelella mediterranea	1	1	singleton
Marvinbryantia formatexigens	1	1	singleton
Massilia alkalitolerans	1	1	singleton
Massilia niastensis	1	1	singleton
Massilia sp.	1	1	singleton
Massilia timonae	1	1	singleton
Mastigocladopsis repens	1	1	singleton
Mastigocoleus testarum	1	1	singleton
Megamonas funiformis	1	1	clique
Megamonas hypermegale	2	2	singleton
Megamonas rupellensis	1	1	clique
Meganema perideroedes	1	1	singleton
Megasphaera cerevisiae	1	1	singleton
Megasphaera elsdenii	1	1	singleton
Megasphaera massiliensis	1	1	singleton
Megasphaera micronuciformis	1	1	singleton
Meiothermus chliarophilus	1	1	singleton
Meiothermus ruber	3	1	clique
Meiothermus rufus	1	1	singleton
Meiothermus silvanus	1	1	singleton
Meiothermus taiwanensis	1	1	singleton
Meiothermus timidus	1	1	singleton
Melioribacter roseus	1	1	singleton
Melissococcus plutonius	2	1	clique
Melitea salexigens	1	1	singleton
Mesoflavibacter zeaxanthinifaciens	2	2	singleton
Mesonia mobilis	1	1	singleton
Mesoplasma chauliocola	1	1	singleton
Mesoplasma florum	1	1	singleton
Mesoplasma seiffertii	1	1	singleton
Mesorhizobium alhagi	1	1	singleton
Mesorhizobium amorphae	1	1	singleton
Mesorhizobium australicum	1	1	singleton
Mesorhizobium ciceri	3	2	clique + singleton
Mesorhizobium loti	7	6	clique + singleton
Mesorhizobium opportunistum	1	1	singleton
Mesorhizobium sp.	5	5	singleton
Mesotoga prima	1	1	singleton
Metallosphaera cuprina	1	1	singleton
Metallosphaera sedula	1	1	singleton
Metascardovia criceti	1	1	singleton
Methanobacterium formicicum	1	1	singleton
Methanobacterium sp.	3	3	singleton
Methanobrevibacter ruminantium	1	1	singleton
Methanobrevibacter smithii	22	2	clique
Methanobrevibacter sp.	2	1	clique
Methanocaldococcus fervens	1	1	singleton
Methanocaldococcus infernus	1	1	singleton
Methanocaldococcus jannaschii	1	1	singleton
Methanocaldococcus sp.	1	1	singleton
Methanocaldococcus villosus	2	1	clique
Methanocaldococcus vulcanius	1	1	singleton
Methanocella arvoryzae	1	1	singleton
Methanocella conradii	1	1	singleton
Methanocella paludicola	1	1	singleton
Methanococcoides burtonii	1	1	singleton
Methanococcus aeolicus	1	1	singleton
Methanococcus maripaludis	4	4	singleton
Methanococcus vannielii	1	1	singleton
Methanococcus voltae	1	1	singleton
Methanocorpusculum bavaricum	1	1	singleton
Methanocorpusculum labreanum	1	1	singleton
Methanoculleus bourgensis	1	1	singleton
Methanoculleus marisnigri	1	1	singleton
Methanofollis liminatans	1	1	singleton
Methanohalobium evestigatum	1	1	singleton
Methanohalophilus mahii	1	1	singleton
Methanolinea tarda	1	1	singleton
Methanolobus psychrophilus	1	1	singleton
Methanolobus tindarius	1	1	singleton
Methanomassiliicoccus luminyensis	1	1	singleton
Methanomethylovorans hollandica	1	1	singleton
Methanoplanus limicola	1	1	singleton
Methanoplanus petrolearius	1	1	singleton
Methanopyrus kandleri	1	1	singleton
Methanoregula formicicum	1	1	singleton
Methanosaeta concilii	1	1	singleton
Methanosaeta harundinacea	1	1	singleton
Methanosaeta thermophila	1	1	singleton
Methanosalsum zhilinae	1	1	singleton
Methanosarcina acetivorans	1	1	singleton
Methanosarcina barkeri	1	1	singleton
Methanosarcina mazei	2	1	clique
Methanosphaera stadtmanae	1	1	singleton
Methanosphaerula palustris	1	1	singleton
Methanospirillum hungatei	1	1	singleton
Methanothermobacter marburgensis	1	1	singleton
Methanothermobacter thermautotrophicus	1	1	singleton
Methanothermococcus okinawensis	1	1	singleton
Methanothermococcus thermolithotrophicus	1	1	singleton
Methanothermus fervidus	1	1	singleton
Methanotorris formicicus	1	1	singleton
Methanotorris igneus	1	1	singleton
Methylacidiphilum fumariolicum	1	1	singleton
Methylacidiphilum infernorum	1	1	singleton
Methylibium petroleiphilum	1	1	singleton
Methylobacillus flagellatus	1	1	singleton
Methylobacter luteus	1	1	singleton
Methylobacter tundripaludum	1	1	singleton
Methylobacterium chloromethanicum	1	1	clique
Methylobacterium extorquens	4	1	clique
Methylobacterium marinus	1	1	singleton
Methylobacterium mesophilicum	1	1	singleton
Methylobacterium nodulans	1	1	singleton
Methylobacterium populi	1	1	singleton
Methylobacterium radiotolerans	1	1	clique
Methylobacterium sp.	12	9	clique + singleton
Methylocaldum szegediense	1	1	singleton
Methylocapsa acidiphila	1	1	singleton
Methylocella silvestris	1	1	singleton
Methylococcus capsulatus	3	1	clique
Methylocystis parvus	1	1	singleton
Methylocystis rosea	1	1	singleton
Methylocystis sp.	3	3	singleton
Methyloferula stellata	1	1	singleton
Methyloglobulus morosus	1	1	singleton
Methylohalobius crimeensis	1	1	singleton
Methylomicrobium album	1	1	singleton
Methylomicrobium alcaliphilum	1	1	singleton
Methylomicrobium buryatense	1	1	singleton
Methylomonas methanica	1	1	singleton
Methylomonas sp.	2	2	singleton
Methylophaga aminisulfidivorans	1	1	singleton
Methylophaga frappieri	1	1	singleton
Methylophaga nitratireducens	1	1	singleton
Methylophaga thiooxydans	1	1	singleton
Methylophilus methylotrophus	1	1	singleton
Methylophilus sp.	3	2	clique + singleton
Methylopila sp.	2	2	singleton
Methylosarcina fibrata	1	1	singleton
Methylosarcina lacus	1	1	singleton
Methylosinus sp.	2	2	singleton
Methylosinus trichosporium	1	1	singleton
Methylotenera mobilis	2	2	singleton
Methylotenera sp.	2	2	clique
Methylotenera versatilis	2	2	clique + singleton
Methyloversatilis sp.	3	3	clique + singleton
Methyloversatilis universalis	3	2	clique + singleton
Methylovorus glucosetrophus	1	1	clique
Methylovorus sp.	1	1	clique
Methylovulum miyakonense	1	1	singleton
Micavibrio aeruginosavorus	1	1	singleton
Micavibrio sp.	1	1	singleton
Microbacterium barkeri	1	1	singleton
Microbacterium gubbeenense	1	1	singleton
Microbacterium indicum	1	1	singleton
Microbacterium laevaniformans	1	1	clique
Microbacterium luticocti	1	1	singleton
Microbacterium oxydans	1	1	singleton
Microbacterium paraoxydans	1	1	clique
Microbacterium sp.	7	7	clique + singleton
Microbacterium testaceum	1	1	singleton
Microbacterium yannicii	1	1	singleton
Microbulbifer variabilis	1	1	singleton
Microchaete sp.	1	1	singleton
Micrococcus luteus	5	2	clique + singleton
Microcoleus chthonoplastes	1	1	singleton
Microcoleus sp.	1	1	singleton
Microcoleus vaginatus	2	1	clique
Microcystis aeruginosa	13	1	clique group
Microcystis sp.	1	1	clique group
Microlunatus phosphovorus	1	1	singleton
Microlunatus sp.	1	1	singleton
Micromonospora aurantiaca	1	1	clique
Micromonospora carbonacea	1	1	singleton
Micromonospora lupini	1	1	singleton
Microscilla marina	1	1	singleton
Microvirga lotononidis	1	1	singleton
Microvirga lupini	1	1	singleton
Mitsuokella multacida	1	1	singleton
Mobilicoccus pelagius	1	1	singleton
Mobiluncus curtisii	4	1	clique group
Mobiluncus mulieris	4	1	clique
Modestobacter multiseptatus	1	1	singleton
Mogibacterium sp.	1	1	singleton
Moorella perchloratireducens	1	1	singleton
Moorella thermoacetica	1	1	singleton
Moraxella boevrei	1	1	singleton
Moraxella caprae	1	1	singleton
Moraxella catarrhalis	12	1	clique
Moraxella macacae	1	1	singleton
Morganella morganii	2	1	clique
Moritella dasanensis	1	1	singleton
Moritella marina	2	1	clique
Moritella sp.	1	1	singleton
Mucilaginibacter paludis	1	1	singleton
Muricauda ruestringensis	1	1	singleton
Mycobacterium abscessus	44	1	clique
Mycobacterium africanum	1	1	clique group
Mycobacterium avium	26	2	clique + singleton
Mycobacterium bovis	9	1	clique group
Mycobacterium canettii	5	1	clique group
Mycobacterium chubuense	1	1	singleton
Mycobacterium colombiense	1	1	singleton
Mycobacterium fortuitum	1	1	clique
Mycobacterium genavense	1	1	singleton
Mycobacterium gilvum	2	1	clique
Mycobacterium hassiacum	2	1	clique
Mycobacterium indicus	1	1	clique
Mycobacterium intracellulare	5	1	clique
Mycobacterium kansasii	1	1	singleton
Mycobacterium leprae	1	1	singleton
Mycobacterium mageritense	1	1	singleton
Mycobacterium marinum	3	1	clique
Mycobacterium massiliense	13	1	clique
Mycobacterium orygis	1	1	clique group
Mycobacterium parascrofulaceum	1	1	singleton
Mycobacterium phlei	1	1	singleton
Mycobacterium rhodesiae	2	2	singleton
Mycobacterium septicum	1	1	singleton
Mycobacterium smegmatis	4	2	clique + singleton
Mycobacterium sp.	77	14	clique + clique group + singleton
Mycobacterium thermoresistibile	1	1	singleton
Mycobacterium tuberculosis	77	1	clique group
Mycobacterium tusciae	1	1	singleton
Mycobacterium ulcerans	1	1	clique
Mycobacterium vaccae	1	1	singleton
Mycobacterium vanbaalenii	1	1	singleton
Mycobacterium xenopi	1	1	singleton
Mycoplasma agalactiae	3	2	clique + singleton
Mycoplasma alkalescens	1	1	singleton
Mycoplasma alligatoris	1	1	singleton
Mycoplasma anatis	1	1	singleton
Mycoplasma arginini	2	2	clique + singleton
Mycoplasma arthritidis	1	1	singleton
Mycoplasma auris	1	1	singleton
Mycoplasma bovigenitalium	1	1	singleton
Mycoplasma bovis	3	1	clique
Mycoplasma canis	5	1	clique
Mycoplasma capricolum	2	1	clique
Mycoplasma columbinum	1	1	singleton
Mycoplasma conjunctivae	1	1	singleton
Mycoplasma cricetuli	1	1	singleton
Mycoplasma crocodyli	1	1	singleton
Mycoplasma cynos	1	1	singleton
Mycoplasma fermentans	3	1	clique
Mycoplasma flocculare	1	1	singleton
Mycoplasma gallisepticum	13	1	clique
Mycoplasma genitalium	5	1	clique
Mycoplasma hominis	2	1	clique
Mycoplasma hyopneumoniae	6	1	clique
Mycoplasma hyorhinis	6	1	clique
Mycoplasma imitans	1	1	singleton
Mycoplasma iowae	1	1	singleton
Mycoplasma leachii	2	1	clique
Mycoplasma moatsii	1	1	singleton
Mycoplasma mobile	1	1	singleton
Mycoplasma mycoides	6	2	clique
Mycoplasma orale	1	1	singleton
Mycoplasma ovipneumoniae	1	1	singleton
Mycoplasma parvum	1	1	singleton
Mycoplasma penetrans	1	1	singleton
Mycoplasma pneumoniae	7	1	clique
Mycoplasma pulmonis	1	1	singleton
Mycoplasma putrefaciens	2	1	clique
Mycoplasma salivarium	1	1	singleton
Mycoplasma sp.	1	1	singleton
Mycoplasma suis	2	1	clique
Mycoplasma synoviae	2	1	clique
Mycoplasma wenyonii	1	1	singleton
Mycoplasma yeatsii	1	1	singleton
Myroides injenensis	1	1	singleton
Myroides odoratimimus	6	2	clique
Myroides odoratus	1	1	clique
Myxococcus Xanthus	1	1	clique
Myxococcus fulvus	1	1	singleton
Myxococcus sp.	1	1	singleton
Myxococcus stipitatus	1	1	singleton
Myxococcus xanthus	2	1	clique
Nafulsella turpanensis	1	1	singleton
Nakamurella multipartita	1	1	singleton
Natranaerobius thermophilus	1	1	singleton
Natrialba aegyptia	1	1	singleton
Natrialba asiatica	1	1	singleton
Natrialba chahannaoensis	1	1	singleton
Natrialba hulunbeirensis	1	1	singleton
Natrialba magadii	2	1	clique
Natrialba taiwanensis	1	1	singleton
Natrinema altunense	1	1	singleton
Natrinema gari	1	1	clique
Natrinema pallidum	1	1	singleton
Natrinema pellirubrum	2	1	clique
Natrinema sp.	1	1	clique
Natrinema versiforme	1	1	singleton
Natronobacterium gregoryi	2	1	clique
Natronococcus amylolyticus	1	1	singleton
Natronococcus jeotgali	1	1	singleton
Natronococcus occultus	1	1	singleton
Natronolimnobius innermongolicus	1	1	singleton
Natronomonas moolapensis	1	1	singleton
Natronomonas pharaonis	1	1	singleton
Natronorubrum bangense	1	1	singleton
Natronorubrum sulfidifaciens	1	1	singleton
Natronorubrum tibetense	2	1	clique
Nautella italica	1	1	singleton
Nautilia profundicola	1	1	singleton
Neisseria cinerea	1	1	singleton
Neisseria flavescens	2	2	singleton
Neisseria gonorrhoeae	16	1	clique
Neisseria lactamica	3	2	clique + singleton
Neisseria macacae	1	1	clique
Neisseria meningitidis	184	1	clique
Neisseria mucosa	1	1	singleton
Neisseria polysaccharea	1	1	singleton
Neisseria shayeganii	1	1	singleton
Neisseria sicca	2	2	singleton
Neisseria sp.	2	2	clique + singleton
Neisseria subflava	1	1	singleton
Neisseria wadsworthii	1	1	singleton
Neisseria weaveri	1	1	singleton
Neorickettsia risticii	1	1	singleton
Neorickettsia sennetsu	1	1	singleton
Neptuniibacter caesariensis	1	1	singleton
Neptunomonas japonica	1	1	singleton
Nesiotobacter exalbescens	1	1	singleton
Nesterenkonia alba	1	1	singleton
Nesterenkonia sp.	1	1	singleton
Nevskia ramosa	1	1	singleton
Niabella aurantiaca	1	1	singleton
Niabella soli	1	1	singleton
Niastella koreensis	1	1	singleton
Nisaea denitrificans	1	1	singleton
Nisaea sp.	1	1	singleton
Nitratifractor salsuginis	1	1	singleton
Nitratireductor aquibiodomus	1	1	singleton
Nitratireductor indicus	1	1	singleton
Nitratireductor pacificus	1	1	singleton
Nitratiruptor sp.	1	1	singleton
Nitratiruptor tergarcus	1	1	singleton
Nitriliruptor alkaliphilus	1	1	singleton
Nitritalea halalkaliphila	1	1	singleton
Nitrobacter hamburgensis	1	1	singleton
Nitrobacter sp.	1	1	singleton
Nitrobacter winogradskyi	1	1	singleton
Nitrococcus mobilis	1	1	singleton
Nitrolancetus hollandicus	1	1	singleton
Nitrosococcus halophilus	1	1	singleton
Nitrosococcus oceani	2	1	clique
Nitrosococcus watsoni	1	1	singleton
Nitrosomonas europaea	1	1	singleton
Nitrosomonas eutropha	1	1	singleton
Nitrosomonas sp.	2	2	singleton
Nitrosopumilus maritimus	1	1	singleton
Nitrosospira multiformis	1	1	singleton
Nitrospina gracilis	1	1	singleton
Nocardia abscessus	1	1	singleton
Nocardia araoensis	1	1	singleton
Nocardia asiatica	1	1	singleton
Nocardia brasiliensis	2	2	singleton
Nocardia brevicatena	1	1	singleton
Nocardia carnea	1	1	singleton
Nocardia cerradoensis	1	1	singleton
Nocardia concava	1	1	singleton
Nocardia cyriacigeorgica	2	2	singleton
Nocardia exalbida	1	1	singleton
Nocardia farcinica	1	1	singleton
Nocardia higoensis	1	1	singleton
Nocardia niigatensis	1	1	singleton
Nocardia paucivorans	1	1	singleton
Nocardia pneumoniae	1	1	singleton
Nocardia sp.	4	4	singleton
Nocardia takedensis	1	1	singleton
Nocardia tenerifensis	1	1	singleton
Nocardia testacea	1	1	singleton
Nocardia thailandica	1	1	singleton
Nocardia transvalensis	1	1	singleton
Nocardia veterana	1	1	singleton
Nocardia vinacea	1	1	singleton
Nocardioides alkalitolerans	1	1	singleton
Nocardioides halotolerans	1	1	singleton
Nocardioides insulae	1	1	singleton
Nocardioides sp.	6	5	clique + singleton
Nocardiopsis alba	2	1	clique
Nocardiopsis alkaliphila	1	1	singleton
Nocardiopsis baichengensis	1	1	clique
Nocardiopsis chromatogenes	1	1	singleton
Nocardiopsis dassonvillei	1	1	clique
Nocardiopsis ganjiahuensis	1	1	singleton
Nocardiopsis gilva	1	1	singleton
Nocardiopsis halophila	1	1	clique
Nocardiopsis halotolerans	1	1	singleton
Nocardiopsis kunsanensis	1	1	singleton
Nocardiopsis lucentensis	1	1	singleton
Nocardiopsis potens	1	1	singleton
Nocardiopsis prasina	1	1	singleton
Nocardiopsis salina	1	1	singleton
Nocardiopsis sp.	2	2	clique + singleton
Nocardiopsis synnemataformans	1	1	singleton
Nocardiopsis valliformis	1	1	singleton
Nocardiopsis xinjiangensis	1	1	singleton
Nodosilinea nodulosa	1	1	singleton
Nodularia spumigena	2	1	clique
Nonomuraea coxensis	1	1	singleton
Nostoc azollae	1	1	singleton
Nostoc punctiforme	1	1	singleton
Nostoc sp.	3	3	singleton
Novispirillum itersonii	1	1	singleton
Novosphingobium acidiphilum	1	1	singleton
Novosphingobium aromaticivorans	1	1	singleton
Novosphingobium nitrogenifigens	2	1	clique
Oceanibaculum indicum	1	1	singleton
Oceanibulbus indolifex	1	1	singleton
Oceanicaulis alexandrii	2	2	singleton
Oceanicola batsensis	1	1	singleton
Oceanicola granulosus	1	1	singleton
Oceanicola sp.	1	1	singleton
Oceanimonas doudoroffii	1	1	singleton
Oceanimonas smirnovii	1	1	singleton
Oceanimonas sp.	1	1	singleton
Oceaniovalibus guishaninsula	1	1	singleton
Oceanithermus profundus	1	1	singleton
Oceanobacillus iheyensis	1	1	singleton
Oceanobacillus massiliensis	1	1	singleton
Oceanobacter kriegii	1	1	singleton
Oceanospirillum beijerinckii	1	1	singleton
Oceanospirillum maris	1	1	singleton
Ochrobactrum anthropi	4	2	clique + singleton
Ochrobactrum intermedium	3	2	clique
Ochrobactrum sp.	1	1	clique
Octadecabacter antarcticus	1	1	singleton
Octadecabacter arcticus	2	1	clique
Odoribacter laneus	1	1	singleton
Odoribacter splanchnicus	1	1	singleton
Oenococcus kitaharae	1	1	singleton
Oenococcus oeni	15	1	clique
Oligella ureolytica	1	1	singleton
Oligella urethralis	1	1	singleton
Oligotropha carboxidovorans	3	1	clique
Olivibacter sitiensis	1	1	singleton
Olleya marilimosa	1	1	singleton
Olleya sp.	2	1	clique
Olsenella sp.	1	1	singleton
Olsenella uli	1	1	singleton
Opitutus terrae	1	1	singleton
Orenia marismortui	1	1	singleton
Oribacterium sinus	1	1	singleton
Oribacterium sp.	6	5	clique + singleton
Orientia tsutsugamushi	2	2	singleton
Ornithinibacillus sp.	1	1	singleton
Ornithinimicrobium pekingense	1	1	singleton
Ornithobacterium rhinotracheale	2	1	clique
Oscillatoria acuminata	1	1	singleton
Oscillatoria formosa	1	1	clique
Oscillatoria nigro-viridis	1	1	singleton
Oscillatoria sp.	2	2	clique + singleton
Oscillibacter ruminantium	1	1	singleton
Oscillibacter valericigenes	1	1	singleton
Oscillochloris trichoides	1	1	singleton
Ottowia thiooxydans	1	1	singleton
Owenweeksia hongkongensis	1	1	singleton
Oxalobacter formigenes	2	2	singleton
Paenibacillus alginolyticus	1	1	singleton
Paenibacillus alvei	3	3	singleton
Paenibacillus assamensis	1	1	singleton
Paenibacillus barengoltzii	2	1	clique
Paenibacillus curdlanolyticus	1	1	singleton
Paenibacillus daejeonensis	1	1	singleton
Paenibacillus dendritiformis	1	1	singleton
Paenibacillus elgii	1	1	singleton
Paenibacillus fonticola	1	1	singleton
Paenibacillus ginsengihumi	1	1	singleton
Paenibacillus harenae	1	1	singleton
Paenibacillus lactis	1	1	clique
Paenibacillus larvae	1	1	singleton
Paenibacillus lautus	1	1	clique
Paenibacillus massiliensis	1	1	clique
Paenibacillus mucilaginosus	3	1	clique
Paenibacillus panacisoli	1	1	clique
Paenibacillus pasadenensis	1	1	singleton
Paenibacillus peoriae	1	1	singleton
Paenibacillus pinihumi	1	1	singleton
Paenibacillus polymyxa	6	4	clique + singleton
Paenibacillus riograndensis	1	1	clique
Paenibacillus sanguinis	1	1	singleton
Paenibacillus senegalensis	1	1	singleton
Paenibacillus sonchi	1	1	clique
Paenibacillus sp.	17	12	clique + singleton
Paenibacillus taiwanensis	1	1	singleton
Paenibacillus terrae	1	1	singleton
Paenibacillus terrigena	1	1	singleton
Paenibacillus uliginis	1	1	singleton
Paenibacillus vortex	1	1	singleton
Paenisporosarcina quisquiliarum	1	1	singleton
Palaeococcus ferrophilus	1	1	singleton
Paludibacter propionicigenes	1	1	singleton
Paludibacterium yongneupense	1	1	singleton
Pandoraea sp.	1	1	singleton
Pannonibacter phragmitetus	1	1	singleton
Pantoea agglomerans	2	2	clique + singleton
Pantoea ananatis	4	1	clique
Pantoea sp.	7	7	clique + singleton
Pantoea stewartii	1	1	singleton
Pantoea vagans	1	1	singleton
Parabacteroides distasonis	3	1	clique
Parabacteroides goldsteinii	1	1	singleton
Parabacteroides gordonii	1	1	singleton
Parabacteroides johnsonii	2	1	clique
Parabacteroides merdae	3	1	clique
Parabacteroides sp.	1	1	clique
Parachlamydia acanthamoebae	2	1	clique
Paracoccus denitrificans	1	1	singleton
Paracoccus pantotrophus	2	1	clique
Paracoccus sp.	6	3	clique + singleton
Paracoccus zeaxanthinifaciens	1	1	singleton
Paraprevotella clara	1	1	clique
Paraprevotella xylaniphila	1	1	singleton
Parascardovia denticolens	3	1	clique
Parasutterella excrementihominis	1	1	clique
Parvibaculum lavamentivorans	1	1	singleton
Parvimonas micra	1	1	singleton
Parvimonas sp.	2	2	singleton
Parvularcula bermudensis	1	1	singleton
Pasteurella bettyae	1	1	singleton
Pasteurella dagmatis	1	1	singleton
Pasteurella multocida	7	1	clique
Pasteurella pneumotropica	1	1	singleton
Pasteurella sp.	5	1	clique
Patulibacter americanus	1	1	singleton
Patulibacter minatonensis	1	1	singleton
Patulibacter sp.	1	1	singleton
Paucisalibacillus globulus	1	1	singleton
Pectobacterium atrosepticum	2	1	clique
Pectobacterium carotovorum	4	4	singleton
Pectobacterium sp.	1	1	clique
Pectobacterium wasabiae	2	2	clique + singleton
Pediococcus acidilactici	4	1	clique
Pediococcus claussenii	1	1	singleton
Pediococcus lolii	1	1	clique
Pediococcus pentosaceus	2	1	clique
Pedobacter agri	1	1	singleton
Pedobacter arcticus	1	1	singleton
Pedobacter glucosidilyticus	1	1	singleton
Pedobacter heparinus	2	1	clique
Pedobacter oryzae	1	1	singleton
Pedobacter saltans	1	1	singleton
Pedobacter sp.	1	1	singleton
Pedobacter unclassified	5	5	singleton
Pedosphaera parvula	1	1	singleton
Pelagibaca bermudensis	1	1	singleton
Pelagibacterium halotolerans	1	1	singleton
Pelobacter carbinolicus	1	1	singleton
Pelobacter propionicus	1	1	singleton
Pelodictyon luteolum	1	1	singleton
Pelodictyon phaeoclathratiforme	1	1	singleton
Pelomonas sp.	1	1	singleton
Pelosinus fermentans	6	2	clique + singleton
Pelosinus sp.	1	1	clique
Pelotomaculum thermopropionicum	1	1	singleton
Peptoniphilus asaccharolyticus	1	1	singleton
Peptoniphilus duerdenii	1	1	singleton
Peptoniphilus grossensis	1	1	singleton
Peptoniphilus harei	1	1	singleton
Peptoniphilus indolicus	1	1	singleton
Peptoniphilus lacrimalis	2	1	clique
Peptoniphilus obesi	1	1	singleton
Peptoniphilus rhinitidis	1	1	singleton
Peptoniphilus senegalensis	1	1	singleton
Peptoniphilus sp.	3	3	clique + singleton
Peptostreptococcus anaerobius	3	1	clique
Peptostreptococcus stomatis	1	1	singleton
Perlucidibaca piscinae	1	1	singleton
Persephonella marina	1	1	singleton
Petrotoga mobilis	1	1	singleton
Phaeobacter arcticus	1	1	singleton
Phaeobacter caeruleus	1	1	singleton
Phaeobacter daeponensis	1	1	clique
Phaeobacter gallaeciensis	3	1	clique
Phaeobacter inhibens	1	1	clique
Phaeobacter sp.	1	1	singleton
Phaeospirillum fulvum	1	1	singleton
Phaeospirillum molischianum	1	1	singleton
Phascolarctobacterium sp.	1	1	singleton
Phenylobacterium zucineum	1	1	singleton
Phocaeicola abscessus	1	1	clique
Photobacterium angustum	1	1	singleton
Photobacterium damselae	2	1	clique
Photobacterium halotolerans	1	1	singleton
Photobacterium leiognathi	1	1	singleton
Photobacterium profundum	2	2	singleton
Photobacterium sp.	2	2	singleton
Photorhabdus asymbiotica	1	1	singleton
Photorhabdus luminescens	1	1	singleton
Photorhabdus temperata	1	1	singleton
Phycisphaera mikurensis	1	1	singleton
Phyllobacterium sp.	1	1	singleton
Picrophilus torridus	1	1	singleton
Pirellula staleyi	1	1	singleton
Piscirickettsia salmonis	3	2	clique + singleton
Planctomyces brasiliensis	1	1	singleton
Planctomyces limnophilus	1	1	singleton
Planctomyces maris	1	1	singleton
Planktothrix Planktothrix	2	1	clique
Planktothrix agardhii	2	1	clique
Planktothrix prolifica	1	1	clique
Planktothrix rubescens	1	1	clique
Planktothrix sp.	3	1	clique
Planktothrix unclassified	2	1	clique
Planococcus antarcticus	1	1	singleton
Planococcus donghaensis	1	1	singleton
Planococcus halocryophilus	1	1	singleton
Pleomorphomonas koreensis	1	1	singleton
Pleomorphomonas oryzae	1	1	singleton
Plesiocystis pacifica	1	1	singleton
Pleurocapsa sp.	2	2	singleton
Polaribacter franzmannii	1	1	singleton
Polaribacter irgensii	1	1	singleton
Polaribacter sp.	1	1	singleton
Polaromonas naphthalenivorans	1	1	singleton
Polaromonas sp.	2	2	singleton
Polymorphum gilvum	1	1	singleton
Polynucleobacter necessarius	3	3	singleton
Polynucleobacter unclassified	1	1	singleton
Pontibacillus halophilus	1	1	singleton
Pontibacillus marinus	1	1	singleton
Pontibacter actiniarum	1	1	singleton
Pontibacter roseus	1	1	singleton
Pontibacter sp.	1	1	singleton
Ponticaulis koreensis	1	1	singleton
Porphyrobacter cryptus	1	1	singleton
Porphyrobacter sp.	1	1	singleton
Porphyromonas asaccharolytica	2	1	clique
Porphyromonas bennonis	1	1	singleton
Porphyromonas catoniae	1	1	singleton
Porphyromonas endodontalis	1	1	clique
Porphyromonas gingivalis	9	1	clique
Porphyromonas gulae	1	1	singleton
Porphyromonas levii	1	1	singleton
Porphyromonas macacae	1	1	singleton
Porphyromonas somerae	1	1	singleton
Porphyromonas sp.	1	1	singleton
Porphyromonas uenonis	2	2	singleton
Prevotella albensis	1	1	singleton
Prevotella amnii	2	1	clique
Prevotella baroniae	1	1	singleton
Prevotella bergensis	1	1	singleton
Prevotella bivia	2	1	clique
Prevotella bryantii	2	1	clique
Prevotella buccae	2	1	clique
Prevotella buccalis	1	1	singleton
Prevotella copri	1	1	singleton
Prevotella corporis	1	1	singleton
Prevotella dentalis	2	1	clique
Prevotella denticola	3	1	clique
Prevotella disiens	1	1	singleton
Prevotella histicola	1	1	singleton
Prevotella intermedia	3	1	clique
Prevotella loescheii	1	1	clique
Prevotella maculosa	2	1	clique
Prevotella marshii	1	1	singleton
Prevotella melaninogenica	2	2	singleton
Prevotella micans	2	1	clique
Prevotella multiformis	1	1	singleton
Prevotella multisaccharivorax	1	1	singleton
Prevotella nanceiensis	1	1	singleton
Prevotella nigrescens	2	1	clique
Prevotella oralis	2	1	clique
Prevotella oris	3	1	clique
Prevotella oulorum	1	1	singleton
Prevotella pallens	1	1	singleton
Prevotella paludivivens	1	1	singleton
Prevotella ruminicola	1	1	singleton
Prevotella saccharolytica	1	1	singleton
Prevotella salivae	1	1	singleton
Prevotella sp.	9	9	clique + singleton
Prevotella stercorea	1	1	singleton
Prevotella tannerae	1	1	singleton
Prevotella timonensis	2	2	singleton
Prevotella veroralis	2	1	clique
Prochlorococcus marinus	12	11	clique + singleton
Prochlorococcus sp.	6	6	singleton
Prochlorothrix hollandica	1	1	singleton
Promicromonospora kroppenstedtii	1	1	singleton
Promicromonospora sukumoe	1	1	singleton
Propionibacterium acidifaciens	2	2	clique + singleton
Propionibacterium acidipropionici	2	1	clique
Propionibacterium acnes	84	3	clique + singleton
Propionibacterium avidum	2	1	clique group
Propionibacterium freudenreichii	1	1	singleton
Propionibacterium jensenii	1	1	singleton
Propionibacterium propionicum	1	1	singleton
Propionibacterium sp.	7	4	clique + clique group + singleton
Propionibacterium thoenii	1	1	singleton
Propionicicella superfundia	1	1	singleton
Propionimicrobium lymphophilum	2	1	clique
Prosthecochloris aestuarii	1	1	singleton
Prosthecomicrobium hirschii	1	1	singleton
Proteiniphilum acetatigenes	1	1	singleton
Proteocatella sphenisci	1	1	singleton
Proteus mirabilis	7	1	clique
Providencia alcalifaciens	2	1	clique
Providencia burhodogranariea	1	1	singleton
Providencia rettgeri	1	1	singleton
Providencia rustigianii	1	1	singleton
Providencia stuartii	2	1	clique
Pseudacidovorax intermedius	1	1	singleton
Pseudaminobacter salicylatoxidans	1	1	singleton
Pseudanabaena sp.	3	3	singleton
Pseudoalteromonas agarivorans	1	1	singleton
Pseudoalteromonas arctica	1	1	clique
Pseudoalteromonas atlantica	1	1	singleton
Pseudoalteromonas citrea	1	1	singleton
Pseudoalteromonas flavipulchra	2	2	singleton
Pseudoalteromonas haloplanktis	3	3	singleton
Pseudoalteromonas luteoviolacea	2	2	singleton
Pseudoalteromonas marina	1	1	clique
Pseudoalteromonas piscicida	2	1	clique
Pseudoalteromonas rubra	1	1	singleton
Pseudoalteromonas ruthenica	1	1	singleton
Pseudoalteromonas sp.	13	8	clique + singleton
Pseudoalteromonas spongiae	1	1	singleton
Pseudoalteromonas tunicata	1	1	singleton
Pseudoalteromonas undina	1	1	singleton
Pseudobutyrivibrio ruminis	2	2	singleton
Pseudochrobactrum sp.	1	1	singleton
Pseudoclavibacter faecalis	1	1	singleton
Pseudoclavibacter soli	1	1	singleton
Pseudogulbenkiania ferrooxidans	1	1	clique
Pseudogulbenkiania sp.	2	2	clique + singleton
Pseudomonas aeruginosa	47	3	clique + singleton
Pseudomonas agarici	1	1	singleton
Pseudomonas alcaliphila	1	1	singleton
Pseudomonas avellanae	2	1	clique
Pseudomonas azotifigens	1	1	singleton
Pseudomonas brassicacearum	2	1	clique
Pseudomonas caeni	1	1	singleton
Pseudomonas cannabina	3	1	clique
Pseudomonas chlororaphis	1	1	singleton
Pseudomonas cremoricolorata	1	1	singleton
Pseudomonas denitrificans	1	1	singleton
Pseudomonas entomophila	1	1	singleton
Pseudomonas extremaustralis	1	1	singleton
Pseudomonas flectens	1	1	singleton
Pseudomonas fluorescens	21	20	clique + singleton
Pseudomonas fragi	2	2	clique + singleton
Pseudomonas fulva	1	1	clique
Pseudomonas fuscovaginae	3	2	clique + singleton
Pseudomonas geniculata	1	1	clique
Pseudomonas luteola	1	1	singleton
Pseudomonas mandelii	2	2	clique + singleton
Pseudomonas mendocina	3	2	clique
Pseudomonas monteilii	1	1	clique
Pseudomonas oleovorans	1	1	clique
Pseudomonas parafulva	1	1	singleton
Pseudomonas pelagia	1	1	singleton
Pseudomonas poae	1	1	clique
Pseudomonas pseudoalcaligenes	2	2	singleton
Pseudomonas psychrophila	1	1	singleton
Pseudomonas psychrotolerans	1	1	clique
Pseudomonas putida	20	9	clique + singleton
Pseudomonas resinovorans	2	2	singleton
Pseudomonas savastanoi	1	1	clique group
Pseudomonas sp.	98	59	clique + singleton
Pseudomonas stutzeri	11	8	clique + singleton
Pseudomonas syringae	101	15	clique + clique group + singleton
Pseudomonas taiwanensis	1	1	singleton
Pseudomonas thermotolerans	2	1	clique
Pseudomonas tolaasii	2	1	clique
Pseudomonas umsongensis	1	1	clique
Pseudomonas veronii	1	1	singleton
Pseudomonas viridiflava	3	1	clique
Pseudomonas vranovensis	1	1	singleton
Pseudonocardia asaccharolytica	1	1	singleton
Pseudonocardia dioxanivorans	1	1	singleton
Pseudonocardia sp.	2	2	singleton
Pseudonocardia spinosispora	1	1	singleton
Pseudoramibacter alactolyticus	1	1	singleton
Pseudorhodobacter ferrugineus	1	1	singleton
Pseudovibrio sp.	2	2	singleton
Pseudoxanthomonas sp.	3	2	clique + singleton
Pseudoxanthomonas spadix	1	1	singleton
Pseudoxanthomonas suwonensis	4	2	clique + singleton
Pseudoxanthomonas taiwanensis	1	1	clique
Psychrilyobacter atlanticus	1	1	singleton
Psychrobacter arcticus	1	1	singleton
Psychrobacter cryohalolentis	1	1	clique
Psychrobacter lutiphocae	1	1	singleton
Psychrobacter sp.	5	5	clique + singleton
Psychroflexus gondwanensis	1	1	singleton
Psychroflexus torquis	1	1	singleton
Psychroflexus tropicus	1	1	singleton
Psychromonas aquimarina	1	1	singleton
Psychromonas arctica	1	1	singleton
Psychromonas hadalis	1	1	singleton
Psychromonas ingrahamii	1	1	singleton
Psychromonas ossibalaenae	1	1	singleton
Psychromonas sp.	1	1	singleton
Psychroserpens burtonensis	1	1	singleton
Pusillimonas noertemannii	1	1	singleton
Pusillimonas sp.	1	1	singleton
Pyramidobacter piscolens	1	1	singleton
Pyrobaculum aerophilum	1	1	singleton
Pyrobaculum arsenaticum	1	1	singleton
Pyrobaculum calidifontis	1	1	singleton
Pyrobaculum islandicum	1	1	singleton
Pyrobaculum sp.	1	1	singleton
Pyrococcus abyssi	1	1	singleton
Pyrococcus furiosus	2	1	clique
Pyrococcus sp.	2	2	singleton
Pyrococcus yayanosii	1	1	singleton
Pyrolobus fumarii	1	1	singleton
Rahnella aquatilis	2	2	clique + singleton
Rahnella sp.	1	1	clique
Ralstonia eutropha	1	1	clique
Ralstonia pickettii	3	2	clique + singleton
Ralstonia solanacearum	11	4	clique + singleton
Ralstonia sp.	7	5	clique + singleton
Ramlibacter tataouinensis	1	1	singleton
Raoultella ornithinolytica	1	1	clique
Raphidiopsis brookii	1	1	singleton
Rathayibacter toxicus	1	1	singleton
Reinekea sp.	1	1	singleton
Renibacterium salmoninarum	1	1	singleton
Reyranella massiliensis	1	1	singleton
Rheinheimera baltica	1	1	singleton
Rheinheimera nanhaiensis	1	1	singleton
Rheinheimera perlucida	1	1	singleton
Rheinheimera sp.	1	1	singleton
Rhizobacter sp.	1	1	clique
Rhizobium etli	3	2	clique + singleton
Rhizobium gallicum	1	1	clique
Rhizobium giardinii	1	1	singleton
Rhizobium larrymoorei	1	1	singleton
Rhizobium leguminosarum	28	16	clique + singleton
Rhizobium lupini	1	1	singleton
Rhizobium mesoamericanum	1	1	clique
Rhizobium mongolense	1	1	singleton
Rhizobium phaseoli	1	1	clique
Rhizobium rhizogenes	1	1	clique
Rhizobium selenitireducens	1	1	singleton
Rhizobium sp.	30	28	clique + singleton
Rhizobium sullae	1	1	singleton
Rhizobium tropici	3	3	singleton
Rhodanobacter fulvus	1	1	singleton
Rhodanobacter sp.	6	3	clique + singleton
Rhodanobacter spathiphylli	1	1	singleton
Rhodanobacter thiooxydans	1	1	singleton
Rhodobacter capsulatus	1	1	singleton
Rhodobacter sp.	2	2	clique + singleton
Rhodobacter sphaeroides	6	2	clique + singleton
Rhodocista centenaria	1	1	singleton
Rhodococcus equi	2	1	clique
Rhodococcus erythropolis	4	2	clique + singleton
Rhodococcus imtechensis	1	1	clique group
Rhodococcus jostii	1	1	clique
Rhodococcus opacus	3	2	clique group + singleton
Rhodococcus pyridinivorans	1	1	singleton
Rhodococcus rhodnii	1	1	singleton
Rhodococcus rhodochrous	3	2	clique + singleton
Rhodococcus ruber	2	2	clique + singleton
Rhodococcus sp.	9	7	clique + singleton
Rhodococcus wratislaviensis	1	1	clique group
Rhodoferax ferrireducens	1	1	singleton
Rhodomicrobium vannielii	1	1	singleton
Rhodonellum psychrophilum	1	1	singleton
Rhodopirellula baltica	3	1	clique
Rhodopirellula europaea	2	2	singleton
Rhodopirellula maiorica	1	1	singleton
Rhodopirellula sallentina	1	1	singleton
Rhodopirellula sp.	1	1	singleton
Rhodopseudomonas palustris	7	6	clique + singleton
Rhodopseudomonas sp.	1	1	singleton
Rhodospirillum photometricum	1	1	singleton
Rhodospirillum rubrum	1	1	singleton
Rhodothermus marinus	3	2	clique + singleton
Rhodovibrio salinarum	1	1	singleton
Rhodovulum sp.	1	1	singleton
Rickettsia africae	1	1	clique
Rickettsia akari	1	1	clique
Rickettsia australis	2	1	clique
Rickettsia bellii	2	1	clique
Rickettsia canadensis	2	1	clique
Rickettsia conorii	2	1	clique
Rickettsia felis	1	1	singleton
Rickettsia heilongjiangensis	1	1	clique
Rickettsia honei	1	1	clique
Rickettsia japonica	1	1	clique
Rickettsia massiliae	2	1	clique
Rickettsia montanensis	1	1	clique
Rickettsia parkeri	1	1	clique
Rickettsia peacockii	1	1	clique
Rickettsia philipii	1	1	clique
Rickettsia prowazekii	6	1	clique
Rickettsia rhipicephali	1	1	clique
Rickettsia rickettsii	14	2	clique
Rickettsia sibirica	2	1	clique
Rickettsia slovaca	2	1	clique
Rickettsia typhi	3	1	clique
Rickettsia unclassified	1	1	singleton
Rickettsiella grylli	1	1	singleton
Riemerella anatipestifer	7	2	clique + singleton
Riemerella columbina	1	1	singleton
Rikenella microfusus	1	1	singleton
Rivularia sp.	1	1	singleton
Robiginitalea biformata	1	1	singleton
Robiginitomaculum antarcticum	1	1	singleton
Roseburia hominis	1	1	singleton
Roseburia intestinalis	3	1	clique
Roseburia inulinivorans	1	1	singleton
Roseibium sp.	1	1	singleton
Roseiflexus castenholzii	1	1	singleton
Roseiflexus sp.	1	1	singleton
Roseobacter RCA	1	1	singleton
Roseobacter denitrificans	1	1	singleton
Roseobacter litoralis	1	1	singleton
Roseobacter sp.	4	4	singleton
Roseomonas cervicalis	1	1	singleton
Roseomonas gilardii	1	1	singleton
Roseomonas sp.	1	1	singleton
Roseovarius nubinhibens	1	1	singleton
Roseovarius sp.	2	2	singleton
Rothia aeria	1	1	singleton
Rothia dentocariosa	2	1	clique
Rothia mucilaginosa	4	4	singleton
Ruania albidiflava	1	1	singleton
Rubellimicrobium thermophilum	1	1	singleton
Rubritalea marina	1	1	singleton
Rubritepida flocculans	1	1	singleton
Rubrivivax benzoatilyticus	2	1	clique
Rubrivivax gelatinosus	2	1	clique
Rubrobacter radiotolerans	1	1	singleton
Rubrobacter xylanophilus	1	1	singleton
Rudaea cellulosilytica	1	1	singleton
Rudanella lutea	1	1	singleton
Ruegeria lacuscaerulensis	1	1	singleton
Ruegeria mobilis	2	1	clique
Ruegeria pomeroyi	1	1	singleton
Ruegeria sp.	4	4	clique + singleton
Ruminococcus albus	3	3	singleton
Ruminococcus bromii	1	1	singleton
Ruminococcus flavefaciens	4	4	singleton
Ruminococcus gauvreauii	1	1	singleton
Ruminococcus gnavus	2	2	clique + singleton
Ruminococcus lactaris	1	1	singleton
Ruminococcus obeum	2	2	singleton
Ruminococcus sp.	4	4	clique + clique group + singleton
Ruminococcus torques	2	2	clique + singleton
Runella limosa	1	1	singleton
Runella slithyformis	1	1	singleton
Runella zeae	1	1	singleton
SAR324 cluster	1	1	singleton
Saccharibacillus kuerlensis	1	1	singleton
Saccharibacillus sacchari	1	1	singleton
Saccharibacter floricola	1	1	singleton
Saccharomonospora azurea	2	1	clique
Saccharomonospora cyanea	1	1	singleton
Saccharomonospora glauca	1	1	singleton
Saccharomonospora halophila	1	1	singleton
Saccharomonospora marina	1	1	singleton
Saccharomonospora paurometabolica	1	1	clique
Saccharomonospora saliphila	1	1	singleton
Saccharomonospora viridis	1	1	singleton
Saccharomonospora xinjiangensis	1	1	singleton
Saccharophagus degradans	1	1	singleton
Saccharopolyspora erythraea	2	1	clique
Saccharopolyspora spinosa	1	1	singleton
Saccharospirillum impatiens	1	1	singleton
Saccharothrix espanaensis	1	1	singleton
Sagittula stellata	1	1	singleton
Salimicrobium sp.	1	1	singleton
Salinarimonas rosea	1	1	singleton
Salinibacillus aidingensis	1	1	singleton
Salinibacter ruber	2	1	clique
Salinibacter sp.	1	1	singleton
Salinibacterium amurskyense	1	1	singleton
Salinicoccus albus	1	1	singleton
Salinicoccus carnicancri	1	1	singleton
Salinimicrobium terrae	1	1	singleton
Salinimicrobium xinjiangense	1	1	singleton
Salinimonas chungwhensis	1	1	singleton
Salinisphaera shabanensis	1	1	singleton
Salinispora arenicola	42	2	clique
Salinispora pacifica	42	9	clique + singleton
Salinispora tropica	6	1	clique
Salinivibrio costicola	1	1	singleton
Salipiger mucosus	1	1	singleton
Salisaeta longa	1	1	singleton
Salmonella bongori	2	1	clique
Salmonella enterica	339	4	clique + singleton
Salsuginibacillus kocurii	1	1	singleton
Sandarakinorhabdus limnophila	1	1	singleton
Sandarakinorhabdus sp.	1	1	singleton
Sanguibacter keddieii	1	1	singleton
Saprospira grandis	2	2	singleton
Saxeibacter lacteus	1	1	singleton
Scardovia inopinata	1	1	singleton
Schlesneria paludicola	1	1	singleton
Schmidhempelia bombi	1	1	singleton
Sciscionella marina	1	1	singleton
Scytonema hofmanni	2	2	singleton
Sebaldella termitidis	1	1	singleton
Sedimentibacter sp.	1	1	singleton
Sedimenticola selenatireducens	1	1	singleton
Sediminibacterium sp.	2	2	singleton
Sediminimonas qiaohouensis	1	1	singleton
Segetibacter koreensis	1	1	singleton
Segniliparus rotundus	1	1	singleton
Segniliparus rugosus	1	1	singleton
Selenomonas artemidis	2	1	clique
Selenomonas bovis	1	1	singleton
Selenomonas flueggei	1	1	singleton
Selenomonas infelix	1	1	singleton
Selenomonas noxia	2	1	clique
Selenomonas ruminantium	2	2	singleton
Selenomonas sp.	7	6	clique + singleton
Selenomonas sputigena	2	1	clique
Senegalemassilia JC110	1	1	singleton
Serinicoccus marinus	2	2	singleton
Serratia marcescens	10	3	clique + singleton
Serratia odorifera	3	2	clique + singleton
Serratia plymuthica	6	1	clique
Serratia proteamaculans	2	1	clique
Serratia sp.	6	4	clique + singleton
Shewanella amazonensis	1	1	singleton
Shewanella baltica	8	1	clique
Shewanella benthica	1	1	singleton
Shewanella colwelliana	1	1	singleton
Shewanella denitrificans	1	1	singleton
Shewanella fidelis	1	1	singleton
Shewanella frigidimarina	1	1	singleton
Shewanella halifaxensis	1	1	singleton
Shewanella loihica	1	1	singleton
Shewanella oneidensis	1	1	singleton
Shewanella pealeana	1	1	singleton
Shewanella piezotolerans	1	1	singleton
Shewanella putrefaciens	3	2	clique + singleton
Shewanella sediminis	1	1	singleton
Shewanella sp.	7	6	clique + singleton
Shewanella violacea	1	1	singleton
Shewanella waksmanii	1	1	singleton
Shewanella woodyi	1	1	singleton
Shigella boydii	7	1	clique group
Shigella dysenteriae	4	1	clique group
Shigella flexneri	24	1	clique group
Shigella sonnei	6	1	clique group
Shigella sp.	1	1	clique group
Shimazuella kribbensis	1	1	singleton
Shimwellia blattae	1	1	clique
Shinella zoogleoides	1	1	singleton
Shuttleworthia satelles	1	1	singleton
Sideroxydans lithotrophicus	1	1	singleton
Sideroxydans unclassified	2	2	singleton
Silanimonas lenta	1	1	singleton
Simiduia agarivorans	2	1	clique
Simkania negevensis	1	1	singleton
Simonsiella muelleri	1	1	singleton
Singularimonas variicoloris	1	1	singleton
Singulisphaera acidiphila	2	1	clique
Sinobacter flavus	1	1	singleton
Sinorhizobium meliloti	7	2	clique + singleton
Slackia exigua	1	1	clique
Slackia heliotrinireducens	1	1	singleton
Slackia piriformis	1	1	singleton
Slackia sp.	1	1	clique
Smaragdicoccus niigatensis	1	1	singleton
Solibacillus silvestris	1	1	clique
Solimonas soli	1	1	singleton
Solirubrobacter soli	1	1	singleton
Solirubrobacter sp.	1	1	singleton
Solitalea canadensis	1	1	singleton
Solobacterium moorei	2	1	clique
Sorangium cellulosum	1	1	singleton
Sphaerobacter thermophilus	1	1	singleton
Sphaerochaeta coccoides	1	1	singleton
Sphaerochaeta globosa	1	1	singleton
Sphaerochaeta pleomorpha	1	1	singleton
Sphaerotilus natans	1	1	singleton
Sphingobacterium spiritivorum	2	2	singleton
Sphingobium chlorophenolicum	1	1	singleton
Sphingobium indicum	1	1	clique
Sphingobium japonicum	1	1	clique
Sphingobium xenophagum	1	1	singleton
Sphingobium yanoikuyae	2	2	singleton
Sphingomonas echinoides	1	1	singleton
Sphingomonas elodea	1	1	singleton
Sphingomonas jaspsi	1	1	singleton
Sphingomonas melonis	3	1	clique
Sphingomonas phyllosphaerae	2	2	singleton
Sphingomonas wittichii	2	1	clique
Sphingopyxis alaskensis	1	1	singleton
Sphingopyxis baekryungensis	1	1	singleton
Spirochaeta africana	1	1	singleton
Spirochaeta alkalica	1	1	singleton
Spirochaeta aurantia	1	1	singleton
Spirochaeta bajacaliforniensis	1	1	singleton
Spirochaeta cellobiosiphila	1	1	singleton
Spirochaeta smaragdinae	1	1	singleton
Spirochaeta thermophila	2	2	singleton
Spiroplasma chrysopicola	1	1	singleton
Spiroplasma diminutum	1	1	singleton
Spiroplasma melliferum	2	1	clique
Spiroplasma syrphidicola	1	1	singleton
Spiroplasma taiwanense	1	1	singleton
Spirosoma linguale	1	1	singleton
Spirosoma luteum	1	1	singleton
Spirosoma panaciterrae	1	1	singleton
Spirosoma spitsbergense	1	1	singleton
Spirulina major	1	1	singleton
Spirulina subsalsa	1	1	singleton
Spongiibacter tropicus	1	1	singleton
Sporichthya polymorpha	1	1	singleton
Sporocytophaga myxococcoides	1	1	singleton
Sporolactobacillus inulinus	1	1	singleton
Sporolactobacillus laevolacticus	1	1	singleton
Sporolactobacillus vineae	2	1	clique
Sporomusa ovata	2	1	clique
Sporosarcina newyorkensis	1	1	singleton
Sporosarcina ureae	1	1	singleton
Stackebrandtia nassauensis	1	1	singleton
Stanieria cyanosphaera	1	1	singleton
Staphylococcus Epidermidis	1	1	clique
Staphylococcus arlettae	1	1	singleton
Staphylococcus aureus	239	3	clique + singleton
Staphylococcus capitis	2	1	clique
Staphylococcus caprae	1	1	clique
Staphylococcus carnosus	1	1	singleton
Staphylococcus delphini	1	1	singleton
Staphylococcus epidermidis	97	8	clique + singleton
Staphylococcus equorum	1	1	clique
Staphylococcus haemolyticus	2	1	clique
Staphylococcus hominis	3	1	clique
Staphylococcus intermedius	1	1	singleton
Staphylococcus lentus	1	1	singleton
Staphylococcus lugdunensis	4	1	clique
Staphylococcus massiliensis	2	1	clique
Staphylococcus pseudintermedius	2	1	clique
Staphylococcus saprophyticus	2	1	clique
Staphylococcus simiae	1	1	singleton
Staphylococcus simulans	1	1	singleton
Staphylococcus sp.	5	5	clique + singleton
Staphylococcus vitulinus	1	1	singleton
Staphylococcus warneri	2	2	clique + singleton
Staphylococcus xylosus	1	1	singleton
Staphylothermus hellenicus	1	1	singleton
Staphylothermus marinus	1	1	singleton
Stappia stellulata	1	1	singleton
Starkeya novella	1	1	singleton
Stenotrophomonas maltophila	1	1	singleton
Stenotrophomonas maltophilia	11	8	clique + singleton
Stenotrophomonas sp.	1	1	singleton
Stigmatella aurantiaca	2	1	clique
Streptobacillus moniliformis	1	1	singleton
Streptococcus agalactiae	255	2	clique
Streptococcus anginosus	8	4	clique
Streptococcus australis	2	1	clique
Streptococcus bovis	3	2	clique
Streptococcus caballi	1	1	singleton
Streptococcus canis	1	1	singleton
Streptococcus castoreus	1	1	singleton
Streptococcus constellatus	3	2	clique
Streptococcus criceti	1	1	singleton
Streptococcus cristatus	2	1	clique
Streptococcus devriesei	1	1	singleton
Streptococcus didelphis	1	1	singleton
Streptococcus downei	1	1	clique
Streptococcus dysgalactiae	7	2	clique + singleton
Streptococcus entericus	1	1	singleton
Streptococcus equi	5	1	clique
Streptococcus equinus	1	1	clique
Streptococcus ferus	1	1	singleton
Streptococcus gallolyticus	3	1	clique
Streptococcus gallolyticus=	1	1	clique
Streptococcus gordonii	1	1	singleton
Streptococcus henryi	1	1	singleton
Streptococcus hyovaginalis	1	1	clique
Streptococcus ictaluri	1	1	singleton
Streptococcus infantarius	2	1	clique
Streptococcus infantis	6	5	clique + singleton
Streptococcus iniae	4	1	clique
Streptococcus intermedius	7	2	clique
Streptococcus lutetiensis	1	1	singleton
Streptococcus macacae	1	1	singleton
Streptococcus marimammalium	1	1	singleton
Streptococcus massiliensis	2	1	clique
Streptococcus merionis	1	1	singleton
Streptococcus minor	1	1	singleton
Streptococcus mitis	17	17	singleton
Streptococcus mutans	86	1	clique
Streptococcus oligofermentans	1	1	singleton
Streptococcus oralis	10	9	clique + singleton
Streptococcus orisratti	1	1	singleton
Streptococcus ovis	1	1	singleton
Streptococcus parasanguinis	6	4	clique + singleton
Streptococcus parauberis	5	1	clique
Streptococcus pasteurianus	1	1	clique
Streptococcus peroris	1	1	singleton
Streptococcus pharyngis	1	1	clique
Streptococcus pleomorphus	1	1	singleton
Streptococcus plurextorum	1	1	singleton
Streptococcus pneumoniae	261	1	clique
Streptococcus porci	1	1	singleton
Streptococcus porcinus	1	1	singleton
Streptococcus pseudopneumoniae	3	1	clique
Streptococcus pseudoporcinus	2	1	clique
Streptococcus pyogenes	31	1	clique
Streptococcus ratti	2	1	clique
Streptococcus salivarius	5	4	clique + singleton
Streptococcus sanguinis	22	16	clique + clique group + singleton
Streptococcus sobrinus	45	2	clique
Streptococcus sp.	24	18	clique + clique group + singleton
Streptococcus suis	92	20	clique + clique group + singleton
Streptococcus thermophilus	7	1	clique group
Streptococcus thoraltensis	1	1	singleton
Streptococcus tigurinus	2	2	singleton
Streptococcus uberis	1	1	singleton
Streptococcus unclassified	1	1	clique
Streptococcus urinalis	2	1	clique
Streptococcus vestibularis	2	1	clique
Streptomyces acidiscabies	1	1	singleton
Streptomyces albulus	1	1	singleton
Streptomyces albus	2	1	clique
Streptomyces auratus	1	1	singleton
Streptomyces avermitilis	1	1	singleton
Streptomyces bingchenggensis	1	1	singleton
Streptomyces bottropensis	1	1	singleton
Streptomyces canus	1	1	singleton
Streptomyces cattleya	3	1	clique
Streptomyces chartreusis	1	1	singleton
Streptomyces clavuligerus	3	1	clique
Streptomyces coelicoflavus	1	1	singleton
Streptomyces coelicolor	1	1	clique
Streptomyces collinus	1	1	singleton
Streptomyces davawensis	1	1	singleton
Streptomyces flavidovirens	1	1	singleton
Streptomyces fulvissimus	1	1	singleton
Streptomyces gancidicus	1	1	singleton
Streptomyces ghanaensis	1	1	clique
Streptomyces globisporus	1	1	singleton
Streptomyces griseoaurantiacus	1	1	singleton
Streptomyces griseoflavus	1	1	singleton
Streptomyces griseus	1	1	clique
Streptomyces hygroscopicus	3	2	clique + singleton
Streptomyces ipomoeae	1	1	singleton
Streptomyces lividans	1	1	clique
Streptomyces mobaraensis	1	1	singleton
Streptomyces pristinaespiralis	1	1	singleton
Streptomyces purpureus	1	1	singleton
Streptomyces rimosus	1	1	singleton
Streptomyces roseosporus	2	1	clique
Streptomyces scabiei	1	1	singleton
Streptomyces scabrisporus	1	1	singleton
Streptomyces somaliensis	1	1	singleton
Streptomyces sp.	63	45	clique + singleton
Streptomyces sulphureus	2	2	singleton
Streptomyces sviceus	1	1	singleton
Streptomyces tsukubaensis	1	1	singleton
Streptomyces turgidiscabies	1	1	singleton
Streptomyces venezuelae	1	1	singleton
Streptomyces violaceusniger	2	2	singleton
Streptomyces viridochromogenes	2	2	singleton
Streptomyces viridosporus	1	1	clique
Streptomyces vitaminophilus	1	1	singleton
Streptomyces xinghaiensis	1	1	singleton
Streptomyces zinciresistens	1	1	singleton
Streptosporangium roseum	1	1	singleton
Stygiolobus azoricus	1	1	clique
Subdoligranulum sp.	1	1	singleton
Subdoligranulum variabile	1	1	singleton
Succinatimonas hippei	1	1	singleton
Succinimonas amylolytica	1	1	singleton
Succinispira mobilis	1	1	singleton
Sulfitobacter sp.	3	2	clique + singleton
Sulfobacillus acidophilus	2	1	clique
Sulfobacillus thermosulfidooxidans	2	1	clique
Sulfolobus acidocaldarius	3	1	clique
Sulfolobus islandicus	15	1	clique
Sulfolobus solfataricus	3	1	clique
Sulfolobus tokodaii	1	1	singleton
Sulfuricella denitrificans	1	1	singleton
Sulfuricurvum kujiense	1	1	singleton
Sulfurihydrogenibium azorense	1	1	singleton
Sulfurihydrogenibium sp.	1	1	singleton
Sulfurihydrogenibium yellowstonense	1	1	singleton
Sulfurimonas autotrophica	1	1	singleton
Sulfurimonas denitrificans	1	1	singleton
Sulfurimonas sp.	2	2	clique + singleton
Sulfurospirillum arcachonense	1	1	singleton
Sulfurospirillum barnesii	1	1	singleton
Sulfurospirillum deleyianum	1	1	singleton
Sulfurovum sp.	2	2	singleton
Sutterella parvirubra	1	1	singleton
Sutterella wadsworthensis	3	2	clique + singleton
Symbiobacterium thermophilum	1	1	singleton
Synechococcus elongatus	2	1	clique
Synechococcus sp.	24	21	clique + singleton
Synechocystis sp.	7	2	clique + singleton
Synergistes sp.	1	1	clique
Syntrophobacter fumaroxidans	1	1	singleton
Syntrophobotulus glycolicus	1	1	singleton
Syntrophomonas wolfei	1	1	singleton
Syntrophorhabdus aromaticivorans	1	1	singleton
Syntrophothermus lipocalidus	1	1	singleton
Syntrophus aciditrophicus	1	1	singleton
Tannerella Human	3	1	clique
Tannerella forsythensis	1	1	singleton
Tannerella sp.	1	1	singleton
Taylorella asinigenitalis	2	1	clique
Taylorella equigenitalis	3	1	clique
Tenacibaculum ovolyticum	1	1	singleton
Tenacibaculum sp.	1	1	singleton
Tepidanaerobacter acetatoxydans	1	1	clique
Tepidanaerobacter sp.	1	1	clique
Tepidiphilus margaritifer	1	1	singleton
Teredinibacter sp.	2	2	clique + singleton
Teredinibacter turnerae	8	2	clique
Terracoccus sp.	1	1	singleton
Terriglobus roseus	1	1	singleton
Terriglobus saanensis	1	1	singleton
Terrimonas ferruginea	1	1	singleton
Tetragenococcus halophilus	1	1	singleton
Tetragenococcus muriaticus	2	1	clique
Thalassobaculum salexigens	1	1	singleton
Thalassobium sp.	1	1	singleton
Thalassospira lucentensis	1	1	singleton
Thalassospira profundimaris	1	1	singleton
Thalassospira xiamenensis	1	1	singleton
Thauera aminoaromatica	2	1	clique
Thauera linaloolentis	1	1	singleton
Thauera phenylacetica	1	1	singleton
Thauera selenatis	1	1	singleton
Thauera sp.	3	2	clique + singleton
Thermacetogenium phaeum	2	1	clique
Thermaerobacter marianensis	1	1	singleton
Thermaerobacter subterraneus	1	1	singleton
Thermanaeromonas toyohensis	1	1	singleton
Thermanaerovibrio acidaminovorans	1	1	singleton
Thermanaerovibrio velox	1	1	singleton
Thermicanus aegyptius	1	1	singleton
Thermincola potens	1	1	singleton
Thermithiobacillus tepidarius	1	1	singleton
Thermoanaerobacter brockii	1	1	clique
Thermoanaerobacter ethanolicus	2	2	clique
Thermoanaerobacter indiensis	1	1	clique
Thermoanaerobacter italicus	1	1	clique
Thermoanaerobacter mathranii	1	1	clique
Thermoanaerobacter pseudethanolicus	1	1	clique
Thermoanaerobacter siderophilus	1	1	clique
Thermoanaerobacter sp.	4	2	clique
Thermoanaerobacter thermocopriae	1	1	clique
Thermoanaerobacter wiegelii	1	1	clique
Thermoanaerobacterium saccharolyticum	1	1	singleton
Thermoanaerobacterium thermosaccharolyticum	2	1	clique
Thermoanaerobacterium xylanolyticum	1	1	singleton
Thermobacillus composti	1	1	singleton
Thermobaculum terrenum	1	1	singleton
Thermobifida cellulosilytica	1	1	singleton
Thermobifida fusca	2	1	clique
Thermobispora bispora	1	1	singleton
Thermococcus barophilus	1	1	singleton
Thermococcus gammatolerans	1	1	singleton
Thermococcus kodakarensis	1	1	singleton
Thermococcus litoralis	1	1	singleton
Thermococcus onnurineus	1	1	singleton
Thermococcus sibiricus	1	1	singleton
Thermococcus sp.	3	3	singleton
Thermococcus zilligii	1	1	singleton
Thermocrinis albus	1	1	singleton
Thermocrinis ruber	1	1	singleton
Thermocrispum agreste	1	1	singleton
Thermocrispum municipale	1	1	singleton
Thermodesulfatator atlanticus	1	1	singleton
Thermodesulfatator indicus	1	1	singleton
Thermodesulfobacterium geofontis	1	1	singleton
Thermodesulfobacterium hveragerdense	1	1	singleton
Thermodesulfobacterium thermophilum	1	1	singleton
Thermodesulfobium narugense	1	1	singleton
Thermodesulfovibrio islandicus	1	1	clique
Thermodesulfovibrio thiophilus	1	1	singleton
Thermodesulfovibrio yellowstonii	1	1	clique
Thermofilum pendens	1	1	singleton
Thermofilum sp.	1	1	singleton
Thermogladius cellulolyticus	1	1	clique
Thermogladius shockii	1	1	clique
Thermomicrobium roseum	1	1	singleton
Thermomonas fusca	1	1	singleton
Thermomonospora curvata	1	1	singleton
Thermonema rossianum	1	1	singleton
Thermoplasma acidophilum	1	1	singleton
Thermoplasma volcanium	1	1	singleton
Thermoproteus neutrophilus	1	1	singleton
Thermoproteus tenax	1	1	singleton
Thermoproteus uzoniensis	1	1	singleton
Thermosediminibacter oceani	1	1	singleton
Thermosinus carboxydivorans	1	1	singleton
Thermosipho africanus	2	1	clique
Thermosipho melanesiensis	1	1	singleton
Thermosphaera aggregans	1	1	singleton
Thermosynechococcus elongatus	1	1	singleton
Thermotoga lettingae	1	1	singleton
Thermotoga maritima	3	1	clique
Thermotoga naphthophila	1	1	clique
Thermotoga neapolitana	1	1	singleton
Thermotoga petrophila	1	1	clique
Thermotoga sp.	2	2	clique + singleton
Thermotoga thermarum	1	1	singleton
Thermovibrio ammonificans	1	1	singleton
Thermovirga lienii	1	1	singleton
Thermus antranikianii	1	1	singleton
Thermus aquaticus	1	1	singleton
Thermus brockianus	1	1	singleton
Thermus igniterrae	1	1	singleton
Thermus islandicus	1	1	singleton
Thermus oshimai	2	1	clique
Thermus scotoductus	2	2	singleton
Thermus sp.	2	2	clique group + singleton
Thermus thermophilus	5	1	clique group
Thioalkalimicrobium aerophilum	1	1	singleton
Thioalkalimicrobium cyclicum	1	1	singleton
Thioalkalivibrio nitratireducens	1	1	singleton
Thioalkalivibrio paradoxus	1	1	clique
Thioalkalivibrio sp.	67	20	clique + singleton
Thioalkalivibrio sulfidophilus	1	1	singleton
Thioalkalivibrio thiocyanodenitrificans	1	1	singleton
Thioalkalivibrio thiocyanoxidans	2	2	clique
Thioalkalivibrio versutus	1	1	singleton
Thiobacillus denitrificans	2	2	singleton
Thiobacillus thioparus	1	1	singleton
Thiocapsa marina	1	1	singleton
Thiocystis violascens	1	1	singleton
Thioflavicoccus mobilis	1	1	singleton
Thiomicrospira arctica	1	1	singleton
Thiomicrospira chilensis	1	1	singleton
Thiomicrospira crunogena	1	1	singleton
Thiomicrospira halophila	1	1	singleton
Thiomicrospira kuenenii	1	1	singleton
Thiomonas arsenitoxydans	1	1	clique
Thiomonas intermedia	1	1	clique
Thiomonas sp.	1	1	singleton
Thiorhodococcus drewsii	1	1	singleton
Thiorhodospira sibirica	1	1	singleton
Thiorhodovibrio sp.	1	1	singleton
Thiothrix disciformis	1	1	singleton
Thiothrix flexilis	1	1	singleton
Thiothrix nivea	1	1	singleton
Thiovulum sp.	1	1	singleton
Timonella senegalensis	1	1	singleton
Tistrella mobilis	1	1	singleton
Tolumonas auensis	1	1	singleton
Tolumonas sp.	1	1	singleton
Treponema azotonutricium	1	1	singleton
Treponema brennaborense	1	1	singleton
Treponema bryantii	1	1	singleton
Treponema caldaria	1	1	singleton
Treponema denticola	12	2	clique + singleton
Treponema maltophilum	1	1	singleton
Treponema medium	1	1	singleton
Treponema pallidum	11	1	clique
Treponema paraluiscuniculi	1	1	clique
Treponema pedis	1	1	singleton
Treponema phagedenis	1	1	singleton
Treponema primitia	1	1	singleton
Treponema saccharophilum	1	1	singleton
Treponema socranskii	1	1	singleton
Treponema sp.	1	1	singleton
Treponema succinifaciens	1	1	singleton
Treponema vincentii	2	1	clique
Tropheryma whipplei	2	1	clique
Truepera radiovictrix	1	1	singleton
Tsukamurella paurometabola	1	1	singleton
Tsukamurella sp.	1	1	singleton
Tuberibacillus calidus	1	1	singleton
Turicella otitidis	1	1	singleton
Turicibacter sanguinis	1	1	clique
Turicibacter sp.	1	1	clique
Turneriella parva	1	1	singleton
Uliginosibacterium gangwonense	1	1	singleton
Ulvibacter sp.	1	1	singleton
Ureaplasma parvum	5	1	clique
Ureaplasma urealyticum	14	1	clique
Ureibacillus thermosphaericus	1	1	singleton
Varibaculum cambriense	1	1	singleton
Variovorax paradoxus	5	4	clique + singleton
Variovorax sp.	11	11	singleton
Veillonella atypica	3	1	clique group
Veillonella dispar	1	1	singleton
Veillonella magna	1	1	singleton
Veillonella montpellierensis	1	1	singleton
Veillonella parvula	3	3	clique + singleton
Veillonella ratti	1	1	singleton
Veillonella sp.	6	4	clique + clique group + singleton
Verminephrobacter eiseniae	1	1	singleton
Verminephrobacter sp.	1	1	singleton
Verrucomicrobium sp.	2	2	singleton
Verrucomicrobium spinosum	1	1	singleton
Verrucosispora maris	1	1	singleton
Vibrio albensis	1	1	clique group
Vibrio alginolyticus	6	3	clique
Vibrio anguillarum	2	1	clique group
Vibrio brasiliensis	1	1	singleton
Vibrio breoganii	3	1	clique
Vibrio campbellii	4	2	clique group + singleton
Vibrio caribbenthicus	1	1	singleton
Vibrio cholerae	165	4	clique + clique group
Vibrio coralliilyticus	2	1	clique
Vibrio crassostreae	5	1	clique
Vibrio cyclitrophicus	20	1	clique
Vibrio fischeri	3	2	clique + singleton
Vibrio fluvialis	2	1	clique
Vibrio furnissii	2	1	clique
Vibrio gazogenes	1	1	singleton
Vibrio harveyi	6	3	clique + clique group
Vibrio ichthyoenteri	1	1	singleton
Vibrio kanaloae	1	1	singleton
Vibrio litoralis	1	1	singleton
Vibrio metschnikovii	1	1	singleton
Vibrio mimicus	3	1	clique
Vibrio natriegens	1	1	clique
Vibrio navarrensis	1	1	singleton
Vibrio nigripulchritudo	1	1	singleton
Vibrio ordalii	6	1	clique group
Vibrio orientalis	2	1	clique
Vibrio parahaemolyticus	20	2	clique + singleton
Vibrio rotiferianus	1	1	singleton
Vibrio rumoiensis	1	1	singleton
Vibrio scophthalmi	1	1	clique
Vibrio shilonii	1	1	singleton
Vibrio sinaloensis	1	1	singleton
Vibrio sp.	14	10	clique + singleton
Vibrio splendidus	13	5	clique + singleton
Vibrio tasmaniensis	5	3	clique + singleton
Vibrio tubiashii	2	1	clique
Vibrio vulnificus	10	1	clique group
Victivallis vadensis	1	1	singleton
Virgibacillus halodenitrificans	1	1	singleton
Virgibacillus sp.	1	1	singleton
Vitreoscilla stercoraria	1	1	singleton
Vulcanisaeta distributa	1	1	clique
Vulcanisaeta moutnovskia	1	1	singleton
Waddlia chondrophila	1	1	singleton
Weeksella virosa	1	1	singleton
Weissella ceti	1	1	singleton
Weissella cibaria	1	1	singleton
Weissella confusa	1	1	singleton
Weissella halotolerans	1	1	singleton
Weissella koreensis	2	1	clique
Weissella paramesenteroides	1	1	singleton
Wenxinia marina	1	1	singleton
Wigglesworthia glossinidia	2	2	singleton
Winogradskyella psychrotolerans	1	1	singleton
Wohlfahrtiimonas chitiniclastica	2	1	clique
Wolbachia endosymbiont	4	3	clique + singleton
Wolbachia persica	1	1	singleton
Wolbachia pipientis	2	2	clique + singleton
Wolbachia sp.	7	6	clique + singleton
Wolbachia unclassified	3	3	clique + singleton
Wolinella succinogenes	1	1	singleton
Woodsholea maritima	1	1	singleton
Xanthobacter autotrophicus	1	1	singleton
Xanthobacter sp.	1	1	singleton
Xanthomonas albilineans	1	1	singleton
Xanthomonas arboricola	2	1	clique
Xanthomonas axonopodis	72	3	clique
Xanthomonas campestris	18	3	clique
Xanthomonas cassavae	1	1	singleton
Xanthomonas citri	3	1	clique
Xanthomonas fragariae	1	1	singleton
Xanthomonas fuscans	3	1	clique
Xanthomonas oryzae	8	2	clique
Xanthomonas perforans	2	2	clique
Xanthomonas sacchari	1	1	clique
Xanthomonas sp.	8	6	clique + singleton
Xanthomonas translucens	3	1	clique
Xanthomonas vasicola	4	1	clique
Xanthomonas vesicatoria	1	1	clique
Xenococcus sp.	1	1	singleton
Xenorhabdus bovienii	1	1	singleton
Xenorhabdus nematophila	1	1	singleton
Xylanibacter oryzae	1	1	singleton
Xylanimonas cellulosilytica	1	1	singleton
Xylella fastidiosa	11	1	clique
Yaniella halotolerans	1	1	singleton
Yersinia aldovae	1	1	singleton
Yersinia bercovieri	1	1	singleton
Yersinia enterocolitica	15	1	clique group
Yersinia frederiksenii	1	1	singleton
Yersinia intermedia	1	1	singleton
Yersinia kristensenii	1	1	singleton
Yersinia massiliensis	1	1	singleton
Yersinia mollaretii	1	1	singleton
Yersinia pestis	99	1	clique
Yersinia pseudotuberculosis	9	1	clique
Yersinia rohdei	1	1	singleton
Yersinia ruckeri	1	1	singleton
Yokenella regensburgei	1	1	singleton
Zavarzinella formosa	1	1	singleton
Zooshikella ganghwensis	1	1	singleton
Zunongwangia profunda	1	1	singleton
Zymomonas mobilis	6	2	clique + singleton
Zymophilus raffinosivorans	1	1	singleton
actinobacterium sp.	1	1	singleton
unclassified	581	538	clique + clique group + singleton
uncultured archaeon sp.	2	2	singleton